determine.input: Determine input format

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Determine input format

Description

Determine input format whether its tabular or bed

Usage

determine.input(x, check.chr = FALSE, verbose = TRUE)

Arguments

x	input vector, matrix or dataframe
check.chr	check whether the coordinates are in chromosomal format with chr prefix
verbose	messages and checks

Value

integer value. index format (0), bed (1), index in first column (2), rownmames are index (3), unrecognized(4)

Author(s)

Daryl Waggott

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();
a <- index[[1]];
bedr:::determine.input(a);
}

bedr documentation built on April 11, 2025, 5:52 p.m.