inst/tests/test.is.valid.region.R

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

# The bedr package is copyright (c) 2014 Ontario Institute for Cancer Research (OICR)
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context("is.valid.region")

test_that("check if region input is valid", {

	regions <- get.example.regions()

	# good region
	expect_equal(is.valid.region(regions$a, verbose = FALSE), c(T,T,T,T,T,T,T,T));
	expect_equal(is.valid.region("chrY:24052505-24052506", verbose = FALSE), T);

	# bad region format (region d has bad)
	expect_equal(is.valid.region(regions$d, verbose = FALSE), c(T,F,T,F,F,F,F,F));
	expect_error(is.valid.region(regions$d, throw.error = TRUE, verbose = FALSE));

	})