API for bigsnpr
Analysis of Massive SNP Arrays
| Global functions | |
|---|---|
| CODE_012 | Man page |
| CODE_DOSAGE | Man page |
| CODE_IMPUTE_PRED | Man page |
| FBM_infos | Source code |
| LD.wiki34 | Man page |
| MLE_alpha | Source code |
| OADP_proj | Source code |
| SCT | Man page |
| WEIGHTS | Source code |
| ZCATT | Source code |
| [,bed,ANY,ANY,ANY-method | Man page |
| [,bed_light,ANY,ANY,ANY-method | Man page |
| as_SFBM | Man page |
| bed | Man page Source code |
| bed-class | Man page |
| bed-methods | Man page |
| bedClumpingChr | Source code |
| bedXPtr | Source code |
| bed_MAF | Man page Source code |
| bed_RC | Man page |
| bed_accessor | Source code |
| bed_autoSVD | Man page Source code |
| bed_clumping | Man page Source code |
| bed_clumping_chr | Source code |
| bed_col_counts_cpp | Source code |
| bed_colstats | Source code |
| bed_cor | Man page |
| bed_counts | Man page Source code |
| bed_cpMatVec4 | Source code |
| bed_cprodVec | Man page Source code |
| bed_ld_scores | Man page Source code |
| bed_pMatVec4 | Source code |
| bed_pcadapt | Man page Source code |
| bed_prodVec | Man page Source code |
| bed_projectPCA | Man page Source code |
| bed_projectSelfPCA | Man page Source code |
| bed_randomSVD | Man page Source code |
| bed_row_counts_cpp | Source code |
| bed_scaleBinom | Man page Source code |
| bed_tcrossprodSelf | Man page Source code |
| bigSNP | Man page |
| bigSNP-class | Man page |
| bigsnpr | Man page |
| bigsnpr-package | Man page |
| center_vec | Source code |
| check_args | Source code |
| check_bgen_format | Source code |
| clumpingChr | Source code |
| clumping_chr | Source code |
| clumping_chr_cached | Source code |
| coef_to_liab | Man page Source code |
| cor0 | Source code |
| corMat | Source code |
| crossprod2 | Source code |
| dim,bed-method | Man page |
| dim,bed_light-method | Man page |
| download_1000G | Man page Source code |
| download_beagle | Man page Source code |
| download_genetic_map | Man page Source code |
| download_plink | Man page Source code |
| download_plink2 | Man page Source code |
| extract_submat_bgen | Source code |
| flip_strand | Source code |
| format_snp_id | Source code |
| getCode | Source code |
| getIntervals | Source code |
| getInverseCode | Source code |
| getLambdaGC | Source code |
| getNewFile | Source code |
| get_C | Source code |
| get_L | Source code |
| get_os | Source code |
| get_pattern | Source code |
| get_perc | Source code |
| impute | Source code |
| imputeChr | Source code |
| lassosum2 | Source code |
| ld0 | Source code |
| ld_scores | Source code |
| ld_scores_sfbm | Source code |
| ldpred2_gibbs_auto | Source code |
| ldpred2_gibbs_one | Source code |
| ldpred2_gibbs_one_sampling | Source code |
| length,bed-method | Man page |
| length,bed_light-method | Man page |
| make_executable | Source code |
| multLinReg | Source code |
| part_prod | Source code |
| pcadapt0 | Source code |
| prodVecRev | Source code |
| prod_and_rowSumsSq | Source code |
| prod_bgen2 | Source code |
| read_bed | Source code |
| read_bed_scaled | Source code |
| read_bgen | Source code |
| readbina | Source code |
| readbina2 | Source code |
| reconstruct_paths | Source code |
| reexports | Man page |
| replaceSNP | Source code |
| same_ref | Man page Source code |
| seq_log | Man page Source code |
| snp_MAF | Man page Source code |
| snp_MAX3 | Man page Source code |
| snp_PRS | Man page Source code |
| snp_ancestry_summary | Man page Source code |
| snp_asGeneticPos | Man page Source code |
| snp_asGeneticPos2 | Man page Source code |
| snp_attach | Man page Source code |
| snp_attachExtdata | Man page Source code |
| snp_autoSVD | Man page Source code |
| snp_beagleImpute | Man page Source code |
| snp_clumping | Man page Source code |
| snp_colstats | Source code |
| snp_cor | Man page |
| snp_fake | Man page Source code |
| snp_fastImpute | Man page Source code |
| snp_fastImputeSimple | Man page Source code |
| snp_fst | Man page Source code |
| snp_gc | Man page Source code |
| snp_getSampleInfos | Man page Source code |
| snp_grid_PRS | Man page Source code |
| snp_grid_clumping | Man page Source code |
| snp_grid_stacking | Man page Source code |
| snp_indLRLDR | Man page Source code |
| snp_lassosum2 | Man page Source code |
| snp_ld_scores | Man page Source code |
| snp_ldpred2_auto | Man page Source code |
| snp_ldpred2_grid | Man page Source code |
| snp_ldpred2_inf | Man page Source code |
| snp_ldsc | Man page Source code |
| snp_ldsc2 | Man page Source code |
| snp_ldsplit | Man page Source code |
| snp_manhattan | Man page Source code |
| snp_match | Man page Source code |
| snp_modifyBuild | Man page Source code |
| snp_pcadapt | Man page Source code |
| snp_plinkIBDQC | Man page Source code |
| snp_plinkKINGQC | Man page Source code |
| snp_plinkQC | Man page Source code |
| snp_plinkRmSamples | Man page Source code |
| snp_prodBGEN | Man page Source code |
| snp_pruning | Man page Source code |
| snp_qq | Man page Source code |
| snp_readBGEN | Man page Source code |
| snp_readBGI | Man page Source code |
| snp_readBed | Man page Source code |
| snp_readBed2 | Man page Source code |
| snp_save | Man page Source code |
| snp_scaleAlpha | Man page Source code |
| snp_scaleBinom | Man page Source code |
| snp_simuPheno | Man page Source code |
| snp_split | Man page Source code |
| snp_subset | Man page Source code |
| snp_thr_correct | Man page Source code |
| snp_writeBed | Man page Source code |
| sp_colSumsSq_sym | Source code |
| sub_bed | Man page Source code |
| subset.bigSNP | Man page Source code |
| sum_transfo_af | Source code |
| system_verbose | Source code |
| testWrite | Source code |
| transform_ind | Source code |
| wlm | Source code |
| wlm_no_int | Source code |
| write.table2 | Source code |
| writebina | Source code |
