predict2.em: Functions to get predictions from 'biomod2_ensemble_model'...

In biomod2: Ensemble Platform for Species Distribution Modeling

Functions to get predictions from biomod2_ensemble_model objects

Description

This function allows the user to predict single models from biomod2_ensemble_model on (new) explanatory variables.

Usage

## S4 method for signature 'biomod2_ensemble_model,SpatRaster'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'biomod2_ensemble_model,data.frame'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'EMmean_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMmean_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMmedian_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMmedian_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMcv_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMcv_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMci_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMci_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMca_biomod2_model,SpatRaster'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMca_biomod2_model,data.frame'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMwmean_biomod2_model,SpatRaster'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMwmean_biomod2_model,data.frame'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

Arguments

object	a biomod2_ensemble_model object
newdata	a data.frame or SpatRaster object containing data for new predictions
predfun	a function, generated by the predict2 method specific to each biomod2_model subclass and used within the generic predict2.biomod2_model.SpatRaster or predict2.biomod2_model.data.frame to do the prediction
seedval	(optional, default NULL) An integer value corresponding to the new seed value to be set
data_as_formal_predictions	(optional, default FALSE). A boolean describing whether newdata is given as raw environmental data (FALSE) or as formal predictions of the individual models used to build the ensemble model (TRUE).
na.rm	(optional, default TRUE) A boolean defining whether Ensemble Model projection should ignore NA in Individual Model projection. Argument ignored by EWmean ensemble algorithm.
...	(optional)

Author(s)

Remi Patin

See Also

biomod2_ensemble_model

Other Toolbox functions: getters.bm, getters.out, load_stored_object(), predict.bm, predict.em, predict2.bm

biomod2 documentation built on July 9, 2023, 6:05 p.m.