Files in ciftiTools

Tools for Reading, Writing, Viewing and Manipulating CIFTI Files

NEWS.md README.md R/combine_xifti.R R/surf_area.R R/even_vert_samp.R R/make_xifti_components.R R/options.R R/expect_equal_xifti.R R/ciftiTools-package.R R/as.xifti.R R/template_xifti.R R/write_cifti_from_separate.R R/as.gifti.R R/ciftiTools.files.R R/convert_xifti.R R/resample_cifti_components.R R/resample_surf.R R/read_surf.R R/rox_args_docs.R R/merge_xifti.R R/resample_gifti.R R/wb_cmd.R R/utils_volume.R R/remap_cifti.R R/make_xifti.R R/read_cifti.R R/rotate_surf.R R/move_mwall.R R/smooth_gifti.R R/move_submask.R R/remove_xifti.R R/fix_xifti.R R/write_nifti.R R/transform_xifti.R R/onAttach.R R/impute_xifti.R R/read_xifti2.R R/set_names_xifti.R R/view_comp.R R/add_surf.R R/utils_surf.R R/read_cifti_convert.R R/read_cifti_flat.R R/view_xifti_surface.R R/is.xifti.R R/smooth_cifti.R R/parc_utils.R R/resample_cifti_from_template.R R/select_xifti.R R/scale_xifti.R R/load_parc.R R/view_xifti.R R/flatten_xifti.R R/view_surf.R R/read_cifti_separate.R R/utils_xifti.R R/edit_mask_surf.R R/load_surf.R R/write_cifti.R R/utils_color.R R/resample_cifti.R R/view_xifti_volume.R R/fix_gifti_mwalls.R R/write_gifti.R R/remap_gifti.R R/newdata_xifti.R R/apply_xifti.R R/info_cifti.R R/write_xifti2.R R/separate_cifti.R R/utils.R tests/testthat.R tests/testthat/test-reading.R tests/testthat/test-resampling.R tests/testthat/test-plotting_sub.R tests/testthat/test-misc.R tests/testthat/test-plotting_surf.R tests/testthat/test-plotting_together.R tests/testthat/test-writing.R man/view_xifti_surface.mesh_val.Rd man/resample_cifti_wrapper.Rd man/resample_cifti_default_fname.Rd man/ciftiTools.Rd man/write_surf_gifti.Rd man/view_comp.Rd man/move_to_submask.Rd man/idx_Param.Rd man/ciftiTools.setOption.Rd man/view_xifti.Rd man/vert_adjacency.Rd man/as.xifti.Rd man/surfR_fname_Param.Rd man/ciftiTools.files.Rd man/S3_Summary.Rd man/resample_cifti.Rd man/area_original_Param.Rd man/vertices_Param.Rd man/view_xifti_surface.surf_hemi.Rd man/view_xifti_surface.draw_mesh.Rd man/x_Param_xifti.Rd man/set_names_xifti.Rd man/ciftiTools.getOption.Rd man/is.xifti.Rd man/info_cifti.Rd man/template_xifti.Rd man/resample_surf.Rd man/header_cifti.Rd man/write_cifti.Rd man/surfL_fname_Param.Rd man/get_intn_meta_from_cifti_xml.Rd man/get_data_meta_from_cifti_xml.Rd man/plot.surf.Rd man/scale_xifti.Rd man/merge_xifti.Rd man/cifti_fname_Param.Rd man/xifti_Param.Rd man/expect_equal_xifti.Rd man/read_cifti_separate.Rd man/ROY_BIG_BL.Rd man/move_from_mwall.Rd man/read_cifti_flat.Rd man/rgl_interactive_plots_Description.Rd man/write_cifti_from_separate.Rd man/format_path.Rd man/parc_vals_to_xifti.Rd man/summary.xifti.Rd man/read_surf.Rd man/remap_cifti.Rd man/resamp_method_Param.Rd man/make_trans_mat.Rd man/resample_cifti_components.Rd man/brainstructures_Param_all.Rd man/is.cifti.Rd man/write_label_table.Rd man/radial_order_surf.Rd man/as.surf_gifti.Rd man/surfR_original_fname_Param.Rd man/newdata_xifti.Rd man/get_cifti_extn.Rd man/convert_xifti.Rd man/view_xifti_surface.draw_title.Rd man/boundary_mask_surf.Rd man/is.xifti_meta.Rd man/plot.xifti.Rd man/S3_Math.Rd man/coordlist_to_vol.Rd man/dim.xifti.Rd man/fix_xifti.Rd man/ncol_xifti.Rd man/crop_vol.Rd man/mask_with_boundary_surf.Rd man/write_subcort_nifti.Rd man/mask_Param_vertices.Rd man/write_metric_gifti.Rd man/resample_cifti_from_template.Rd man/view_surf.Rd man/make_subcort.Rd man/remove_xifti.Rd man/apply_xifti.Rd man/surf_area.Rd man/resample_gifti.Rd man/unmask_cortex.Rd man/infer_resolution.Rd man/get_misc_meta_from_cifti_xml.Rd man/resamp_res_Param_optional.Rd man/surface_plot_Params.Rd man/dot-onAttach.Rd man/edit_mask_surf.Rd man/dist_from_mask_surf.Rd man/merge_kwargs.Rd man/verbose_Param_TRUE.Rd man/area_target_Param.Rd man/transform_xifti.Rd man/supported_intents.Rd man/all_integers.Rd man/surfL_original_fname_Param.Rd man/load_surf.Rd man/vox_locations.Rd man/ROI_brainstructures_Param_all.Rd man/separate_cifti_wrapper.Rd man/make_xifti.Rd man/as.metric_gifti.Rd man/use_color_pal.Rd man/view_xifti.title.Rd man/view_xifti.cbar.Rd man/view_xifti_surface.Rd man/is.3D_mask.Rd man/match_exactly.Rd man/crop_image.Rd man/get_wb_cmd_path.Rd man/parc_borders.Rd man/surfR_target_fname_Param.Rd man/read_cifti_convert.Rd man/combine_xifti.Rd man/original_fnames_Param_resampled.Rd man/parc_add_subcortex.Rd man/as.matrix.xifti.Rd man/write_xifti2.Rd man/wb_path_request.Rd man/write_spheres.Rd man/read_dir_Param_separated.Rd man/summary.surf.Rd man/move_to_mwall.Rd man/flatten_xifti.Rd man/rotate_surf.Rd man/S3_Ops.Rd man/make_cortex.Rd man/ciftiTools_msg.Rd man/unmask_subcortex.Rd man/separate_cifti.Rd man/unvec_vol.Rd man/apply_parc.Rd man/remap_gifti.Rd man/read_cifti.Rd man/confirm_wb_cmd_path.Rd man/ciftiTools.listOptions.Rd man/original_fnames_Param_remapped.Rd man/substructure_table.Rd man/smooth_gifti.Rd man/move_from_submask.Rd man/match_input.Rd man/surfL_target_fname_Param.Rd man/read_xifti2.Rd man/labels_Description.Rd man/mask_surf.Rd man/sys_path.Rd man/view_xifti_volume.Rd man/select_xifti.Rd man/is.fname.Rd man/verbose_Param_FALSE.Rd man/smooth_cifti.Rd man/surfR_Param_optional.Rd man/separate_cifti_files.Rd man/is.surf.Rd man/fix_gifti_mwall.Rd man/remap_cifti_wrapper.Rd man/pad_vol.Rd man/write_dir_Param_generic.Rd man/xml_cifti.Rd man/nrow_xifti.Rd man/is.xifti_data.Rd man/is.nummat.Rd man/rgl_static_plots_Description.Rd man/make_color_pal.Rd man/even_vert_samp.Rd man/get_kwargs.Rd man/add_surf.Rd man/assure_parc.Rd man/view_xifti_surface.color.Rd man/ciftiTools.checkOption.Rd man/load_parc.Rd man/ciftiTools_warn.Rd man/faces_Param.Rd man/load_sub_parc.Rd man/surfL_Param_optional.Rd man/is.subcort_labs.Rd man/cifti_component_suffix.Rd man/check_cifti_type.Rd man/welcome_msg.Rd man/view_xifti.cleg.Rd man/resamp_res_Param_required.Rd man/parc_mean_mat.Rd man/expand_color_pal.Rd man/run_wb_cmd.Rd