Man pages for coloc
Colocalisation Tests of Two Genetic Traits

annotate_susieannotate susie_rss output for use with coloc_susie
approx.bf.estimatesInternal function, approx.bf.estimates
approx.bf.pInternal function, approx.bf.p
bin2linbinomial to linear regression conversion
check_alignmentcheck alignment
check_datasetcheck_dataset
coloc.abfFully Bayesian colocalisation analysis using Bayes Factors
coloc.bf_bfColoc data through Bayes factors
coloc.detailBayesian colocalisation analysis with detailed output
coloc-packageColocalisation tests of two genetic traits
coloc.processPost process a coloc.details result using masking
coloc.signalsColoc with multiple signals per trait
coloc.susierun coloc using susie to detect separate signals
coloc.susie_bfrun coloc using susie to detect separate signals
coloc_test_dataSimulated data to use in testing and vignettes in the coloc...
combine.abfcombine.abf
est_condgenerate conditional summary stats
estgeno1estgeno1
find.best.signalPick out snp with most extreme Z score
findendstrim a dataset to central peak(s)
findpeakstrim a dataset to only peak(s)
finemap.abfBayesian finemapping analysis
finemap.bfFinemap data through Bayes factors
finemap.signalsFinemap multiple signals in a single dataset
logbf_to_pplogbf 2 pp
logdifflogdiff
logsumlogsum
map_condfind the next most significant SNP, conditioning on a list of...
map_maskfind the next most significant SNP, masking a list of sigsnps
plot_datasetplot a coloc dataset
plot-methodsplot a coloc_abf object
print-methodsprint.coloc_abf
process.datasetprocess.dataset
runsusieRun susie on a single coloc-structured dataset
sdY.estEstimate trait variance, internal function
sensitivityPrior sensitivity for coloc
subset_datasetsubset_dataset
Var.dataVar.data
Var.data.ccVar.data
coloc documentation built on Oct. 3, 2023, 5:07 p.m.