annotate_susie: annotate susie_rss output for use with coloc_susie

In coloc: Colocalisation Tests of Two Genetic Traits

annotate susie_rss output for use with coloc_susie

Description

coloc functions need to be able to link summary stats from two different datasets and they do this through snp identifiers. This function takes the output of susie_rss() and adds snp identifiers. It is entirely the user's responsibility to ensure snp identifiers are in the correct order, coloc cannot make any sanity checks.

Usage

annotate_susie(res, snp, LD)

Arguments

res	output of susie_rss()
snp	vector of snp identifiers
LD	matrix of LD (r) between snps in snp identifiers. Columns, rows should be named by a string that exists in the vector snp

Details

Note: this annotation step is not needed if you use runsusie() - this is only required if you use the susieR functions directly

Value

res with column names added to some components

Author(s)

Chris Wallace

coloc documentation built on Oct. 3, 2023, 5:07 p.m.