logbf_to_pp: logbf 2 pp
In coloc: Colocalisation Tests of Two Genetic Traits
logbf_to_pp R Documentation
logbf 2 pp
Description
generic convenience function to convert logbf matrix to PP matrix
Usage
logbf_to_pp(bf, pi, last_is_null)
Arguments
bf
an L by p or p+1 matrix of log Bayes factors
pi
either a scalar representing the prior probability for any snp
to be causal, or a full vector of per snp / null prior probabilities
last_is_null
TRUE if last value of the bf vector or last column of a
bf matrix relates to the null hypothesis of no association. This is
standard for SuSiE results, but may not be for BF constructed in other
ways.
Value
matrix of posterior probabilities, same dimensions as bf
Author(s)
Chris Wallace
coloc documentation built on Oct. 3, 2023, 5:07 p.m.
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| logbf_to_pp | R Documentation |
logbf 2 pp
Description
generic convenience function to convert logbf matrix to PP matrix
Usage
logbf_to_pp(bf, pi, last_is_null)
Arguments
bf |
an L by p or p+1 matrix of log Bayes factors |
pi |
either a scalar representing the prior probability for any snp to be causal, or a full vector of per snp / null prior probabilities |
last_is_null |
TRUE if last value of the bf vector or last column of a bf matrix relates to the null hypothesis of no association. This is standard for SuSiE results, but may not be for BF constructed in other ways. |
Value
matrix of posterior probabilities, same dimensions as bf
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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