findends: trim a dataset to central peak(s)
In coloc: Colocalisation Tests of Two Genetic Traits
findends R Documentation
trim a dataset to central peak(s)
Description
tries to be smart about detecting the interesting subregion to finemap/coloc.
Usage
findends(d, maxz = 4, maxr2 = 0.1, do.plot = FALSE)
Arguments
d
a coloc dataset
maxz
keep all snps between the leftmost and rightmost snp with |z| >
maxz
maxr2
expand window to keep all snps between snps with r2 > maxr2
with the left/rightmost snps defined by the maxz threshold
do.plot
if TRUE, plot dataset + boundaries
Value
logical vector of length d$position indicating which snps to keep
Author(s)
Chris Wallace
See Also
findpeaks
coloc documentation built on Oct. 3, 2023, 5:07 p.m.
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| findends | R Documentation |
trim a dataset to central peak(s)
Description
tries to be smart about detecting the interesting subregion to finemap/coloc.
Usage
findends(d, maxz = 4, maxr2 = 0.1, do.plot = FALSE)
Arguments
d |
a coloc dataset |
maxz |
keep all snps between the leftmost and rightmost snp with |z| > maxz |
maxr2 |
expand window to keep all snps between snps with r2 > maxr2 with the left/rightmost snps defined by the maxz threshold |
do.plot |
if TRUE, plot dataset + boundaries |
Value
logical vector of length d$position indicating which snps to keep
Author(s)
Chris Wallace
See Also
findpeaks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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