check_alignment: check alignment
In coloc: Colocalisation Tests of Two Genetic Traits
check_alignment R Documentation
check alignment
Description
check alignment between beta and LD
Usage
check_alignment(D, thr = 0.2, do_plot = TRUE)
check.alignment(...)
Arguments
D
a coloc dataset
thr
plot SNP pairs in absolute LD > thr
do_plot
if TRUE (default) plot the diagnostic
...
arguments passed to check_alignment()
Value
proportion of pairs that are positive
Author(s)
Chris Wallace
coloc documentation built on Oct. 3, 2023, 5:07 p.m.
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| check_alignment | R Documentation |
check alignment
Description
check alignment between beta and LD
Usage
check_alignment(D, thr = 0.2, do_plot = TRUE)
check.alignment(...)
Arguments
D |
a coloc dataset |
thr |
plot SNP pairs in absolute LD > thr |
do_plot |
if TRUE (default) plot the diagnostic |
... |
arguments passed to check_alignment() |
Value
proportion of pairs that are positive
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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