map_mask: find the next most significant SNP, masking a list of sigsnps
In coloc: Colocalisation Tests of Two Genetic Traits
map_mask R Documentation
find the next most significant SNP, masking a list of sigsnps
Description
Internal helper function for finemap.signals
Usage
map_mask(D, LD, r2thr = 0.01, sigsnps = NULL)
Arguments
D
dataset in standard coloc format
LD
named matrix of r
r2thr
mask all snps with r2 > r2thr with any in sigsnps
sigsnps
names of snps to mask
Value
named numeric - Z score named by snp
Author(s)
Chris Wallace
coloc documentation built on Oct. 3, 2023, 5:07 p.m.
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| map_mask | R Documentation |
find the next most significant SNP, masking a list of sigsnps
Description
Internal helper function for finemap.signals
Usage
map_mask(D, LD, r2thr = 0.01, sigsnps = NULL)
Arguments
D |
dataset in standard coloc format |
LD |
named matrix of r |
r2thr |
mask all snps with r2 > r2thr with any in sigsnps |
sigsnps |
names of snps to mask |
Value
named numeric - Z score named by snp
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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