combine.abf: combine.abf

In coloc: Colocalisation Tests of Two Genetic Traits

combine.abf

Description

Internal function, calculate posterior probabilities for configurations, given logABFs for each SNP and prior probs

Usage

combine.abf(l1, l2, p1, p2, p12, quiet = FALSE)

Arguments

l1	merged.df$lABF.df1
l2	merged.df$lABF.df2
p1	prior probability a SNP is associated with trait 1, default 1e-4
p2	prior probability a SNP is associated with trait 2, default 1e-4
p12	prior probability a SNP is associated with both traits, default 1e-5
quiet	don't print posterior summary if TRUE. default=FALSE

Value

named numeric vector of posterior probabilities

Author(s)

Claudia Giambartolomei, Chris Wallace

coloc documentation built on Oct. 3, 2023, 5:07 p.m.