cvasi
Calibration, Validation, and Simulation of TKTD Models

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cvasi: Calibration, Validation, and Simulation of TKTD Models
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API for cvasi
Calibration, Validation, and Simulation of TKTD Models

Global functions
%>% Man page
Algae-class Man page
Algae-models Man page
AlgaeSimple-class Man page
AlgaeSimpleScenario-class Man page
AlgaeTKTD-class Man page
AlgaeTKTDScenario-class Man page
AlgaeWeber-class Man page
AlgaeWeberScenario-class Man page
Algae_Simple Man page Source code
Algae_TKTD Man page Source code
Algae_Weber Man page Source code
Biomass-transfer Man page
CalibrationSet Man page Source code
CalibrationSet-class Man page
DEB-models Man page
DEB_Daphnia Man page Source code
DEB_abj Man page Source code
DEBtox Man page Source code
DEBtox2019 Man page
Deb-class Man page
DebAbj-class Man page
DebDaphnia-class Man page
DebTox-class Man page
EffectScenario-class Man page
ExposureSeries Man page Source code
ExposureSeries-class Man page
GUTS-IT Man page
GUTS-RED-IT Man page
GUTS-RED-SD Man page
GUTS-RED-models Man page
GUTS-SD Man page
GUTS_IT Man page Source code
GUTS_RED_IT Man page Source code
GUTS_RED_SD Man page Source code
GUTS_SD Man page Source code
Guts-class Man page
GutsIt-class Man page
GutsRedIt-class Man page
GutsRedSd-class Man page
GutsSd-class Man page
Lemna-class Man page
Lemna-models Man page
LemnaSchmitt-class Man page
LemnaSchmittScenario-class Man page
LemnaSetac-class Man page
LemnaSetacScenario-class Man page
Lemna_SETAC Man page Source code
Lemna_Schmitt Man page Source code
Lemna_SchmittThold Man page Source code
Macrophyte-models Man page
Magma Man page Source code
Magma-class Man page
Myrio Man page Source code
Myrio_log Man page Source code
NoExposureSeries-class Man page
ParameterSet-class Man page
SAM-X Man page
SamX Man page
ScenarioSequence-class Man page
Scenarios Man page
ToxData-class Man page
Transferable Man page
Transferable-class Man page
[,ScenarioSequence,numeric,missing,missing-method Man page
[[,ScenarioSequence,numeric-method Man page
[[<-,ScenarioSequence,numeric,ANY,ANY-method Man page
[[<-,ScenarioSequence,numeric,missing,EffectScenario-method Man page
americamysis Man page
batch Man page Source code
breaks_from_sequence Source code
cache_controls Man page Source code
cache_windows Source code
calc_effect Source code
calibrate Man page
calibrate,CalibrationSet-method Man page
calibrate,EffectScenario-method Man page
calibrate,ScenarioSequence-method Man page
calibrate,list-method Man page
calibrate_list Source code
calibrate_scenario Source code
caliset Man page Source code
check_bounds Source code
check_exposure Source code
check_inputs_lik_prof Source code
check_sequence Source code
ci_from_hessian Man page Source code
clip_forcings Source code
clip_scenario Source code
diagnostics Man page Source code
diagnostics.cvasi_simulate Man page Source code
diagnostics.default Man page Source code
dmagna Man page
dose_response Man page Source code
effect Man page
effect,EffectScenario-method Man page
effect,ScenarioSequence-method Man page
effect_scenario Source code
epx Man page Source code
epx_binary_search Source code
epx_min_win Source code
epx_mtw Man page Source code
eval_cs Source code
explore_space Man page Source code
fit_growth Man page
fit_growth,ANY,ANY-method Man page
fit_growth,EffectScenario,ANY-method Man page
fit_growth,LemnaSchmitt,missing-method Man page
fit_growth,LemnaSetac,missing-method Man page
fit_growth,Magma,missing-method Man page
fit_growth,ScenarioSequence,ANY-method Man page
fit_growth,list,missing-method Man page
fit_growth_lemna Source code
fit_growth_lemna_schmitt Source code
fit_growth_list Source code
fit_growth_magma Source code
fit_growth_scenario Source code
fit_tktd Man page
fit_tktd,ANY,ANY-method Man page
fit_tktd,CalibrationSet,ANY-method Man page
fit_tktd,CalibrationSet,missing-method Man page
fit_tktd,EffectScenario,ANY-method Man page
fit_tktd,LemnaSchmitt,missing-method Man page
fit_tktd,LemnaSetac,missing-method Man page
fit_tktd,Magma,missing-method Man page
fit_tktd,ScenarioSequence,ANY-method Man page
fit_tktd,cvasi_fit,ANY-method Man page
fit_tktd,list,missing-method Man page
fit_tktd_caliset Source code
fit_tktd_fit Source code
fit_tktd_lemna_schmitt Source code
fit_tktd_lemna_setac Source code
fit_tktd_list Source code
fit_tktd_magma Source code
fit_tktd_scenario Source code
focusd1 Man page
format_table Source code
fx Man page
fx,ANY-method Man page
fx,Algae-method Man page
fx,GutsIt-method Man page
fx,GutsRedIt-method Man page
fx,GutsRedSd-method Man page
fx,GutsSd-method Man page
fx,Lemna-method Man page
fx,Magma-method Man page
fx,ScenarioSequence-method Man page
fx_algae Source code
fx_default Source code
fx_gutsredit Source code
fx_gutsredsd Source code
fx_lemna Source code
fx_sequence Source code
get_bounds Source code
get_endpoints Source code
get_forcings Source code
get_model Man page
get_model,ANY-method Man page
get_model,EffectScenario-method Man page
get_model,ParameterSet-method Man page
get_model,list-method Man page
get_model_name Man page Source code
get_param Man page
get_param,ANY-method Man page
get_param,EffectScenario-method Man page
get_param,ParameterSet-method Man page
get_param,ScenarioSequence-method Man page
get_param,list-method Man page
get_req_forcings Source code
get_tag Man page
get_tag,ANY-method Man page
get_tag,EffectScenario-method Man page
get_tag,ParameterSet-method Man page
get_tag,ScenarioSequence-method Man page
get_tag,list-method Man page
get_times Man page
get_times,ANY-method Man page
get_times,EffectScenario-method Man page
get_times,ScenarioSequence-method Man page
get_times,list-method Man page
get_times_seq Source code
get_vars Source code
get_window Source code
has_constant_forcings Source code
has_controls Source code
has_exposure Source code
has_forcings Source code
has_irregular_transfer Source code
has_regular_transfer Source code
has_transfer Source code
has_units Source code
has_windows Source code
import_morse Man page Source code
import_swash Man page Source code
import_toxswa Man page Source code
is_DEB Man page Source code
is_GUTS Man page Source code
is_GUTS_IT Man page Source code
is_GUTS_SD Man page Source code
is_Lemna Man page Source code
is_LemnaThreshold Man page Source code
is_caliset Source code
is_control_required Source code
is_deb Man page Source code
is_exp_series Source code
is_guts Man page Source code
is_guts_it Man page Source code
is_guts_sd Man page Source code
is_lemna Man page Source code
is_no_exposure Source code
is_param_match Source code
is_parameter_set Source code
is_pckg_avail Source code
is_regular_series Source code
is_scenario Man page Source code
is_sequence Source code
length,ScenarioSequence-method Man page
lik_profile Man page Source code
log_disable Man page Source code
log_enable Man page Source code
log_envir Man page Source code
log_lik Man page Source code
log_msg Man page Source code
log_msgf Source code
log_scenarios Man page Source code
log_sse Source code
metsulfuron Man page
minnow_it Man page
minnow_sd Man page
mock_as_scenario Source code
morse Man page Source code
no_exposure Man page Source code
num_aborted Source code
num_error Source code
num_info Man page Source code
num_info.cvasi_fit Man page Source code
num_info.cvasi_simulate Man page Source code
num_info.default Man page Source code
num_success Source code
ode2df Source code
optim_set Source code
parameter_set Man page Source code
parameter_set-class Man page
pll_debug Man page Source code
plot Man page
plot.cvasi_drc Man page Source code
plot.cvasi_simulate Man page Source code
plot.lik_profile Man page Source code
plot.param_space Man page Source code
plot_epx Man page Source code
plot_lik_profile Man page Source code
plot_param_space Man page Source code
plot_ppc Man page Source code
plot_ppc_combi Man page Source code
plot_scenario Man page Source code
plot_sd Man page Source code
profile_par Source code
pull_metadata Man page Source code
ringtest_c Man page
ringtest_it Man page
ringtest_sd Man page
rsubcapitata Man page
scenario Man page
scenarios Man page
schmitt2013 Man page
sequence Man page Source code
sequence.extract Man page
set_all Source code
set_bounds Man page
set_bounds,CalibrationSet,list-method Man page
set_bounds,EffectScenario,list-method Man page
set_bounds,ScenarioSequence,list-method Man page
set_bounds,list,list-method Man page
set_endpoints Man page Source code
set_exposure Man page
set_exposure,ANY,ANY-method Man page
set_exposure,EffectScenario,ExposureSeries-method Man page
set_exposure,EffectScenario,NoExposureSeries-method Man page
set_exposure,EffectScenario,data.frame-method Man page
set_exposure,EffectScenario,list-method Man page
set_exposure,ScenarioSequence,ANY-method Man page
set_exposure,list,ANY-method Man page
set_exposure,list,list-method Man page
set_exposure_dfr Source code
set_exposure_exs Source code
set_exposure_lst Source code
set_exposure_noexs Source code
set_forc_default Source code
set_forc_list Source code
set_forcings Man page
set_forcings,EffectScenario-method Man page
set_forcings,list-method Man page
set_init Man page
set_init,EffectScenario-method Man page
set_init,ScenarioSequence-method Man page
set_init,vector-method Man page
set_moa Man page Source code
set_mode_of_action Man page Source code
set_noexposure Man page Source code
set_notransfer Man page Source code
set_nowindow Man page Source code
set_param Man page
set_param,CalibrationSet,ANY-method Man page
set_param,EffectScenario,ParameterSet-method Man page
set_param,EffectScenario,vector-method Man page
set_param,ScenarioSequence,ANY-method Man page
set_param,list,ParameterSet-method Man page
set_param,list,vector-method Man page
set_param_multi Source code
set_tag Man page Source code
set_times Man page
set_times,ANY-method Man page
set_times,EffectScenario-method Man page
set_times,ScenarioSequence-method Man page
set_times,list-method Man page
set_times_scenario Source code
set_times_sequence Source code
set_transfer Man page
set_transfer,ANY-method Man page
set_transfer,Transferable-method Man page
set_transfer2 Source code
set_window Man page Source code
show_exposure Source code
show_scenario Source code
simulate Man page
simulate,EffectScenario-method Man page
simulate,ScenarioSequence-method Man page
simulate,SimulationBatch-method Man page
simulate,Transferable-method Man page
simulate_batch Man page Source code
simulate_batch2 Source code
simulate_scenario Source code
simulate_seq Source code
simulate_transfer Source code
solver Man page
solver,ANY-method Man page
solver,AlgaeSimple-method Man page
solver,AlgaeTKTD-method Man page
solver,AlgaeWeber-method Man page
solver,DebAbj-method Man page
solver,DebDaphnia-method Man page
solver,DebTox-method Man page
solver,GutsIt-method Man page
solver,GutsRedIt-method Man page
solver,GutsRedSd-method Man page
solver,GutsSd-method Man page
solver,LemnaSchmitt-method Man page
solver,LemnaSetac-method Man page
solver,Magma-method Man page
solver_algae_simple Source code
solver_algae_tktd Source code
solver_algae_weber Source code
solver_deb_abj Source code
solver_debtox Source code
solver_debtox_daphnia Source code
solver_default Source code
solver_gutsit Source code
solver_gutsredit Source code
solver_gutsredsd Source code
solver_gutssd Source code
solver_lemna_schmitt Source code
solver_lemna_setac Source code
solver_magma Source code
split_sequence Source code
sse Source code
survival Man page Source code
tail_nm Source code
td2cs Man page
tox_data Man page Source code
window_candidates Source code
cvasi documentation built on Sept. 11, 2025, 5:11 p.m.

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