enveomics.R: Various R Functions from the Kostas Lab

Share:

A collection of R functions of common use in the Kostas Lab for microbial ecology.

Author
Luis M. Rodriguez-R [aut, cre]
Date of publication
2016-08-16 19:50:24
Maintainer
Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
License
Artistic-2.0
Version
1.1.1
URLs

View on CRAN

Man pages

enve.barplot
enve barplot
enve.cliopts
enve cliopts
enve.col2alpha
enve col2alpha
enve.df2dist
enve df2dist
enve.df2dist.group
enve df2dist group
enve.df2dist.list
enve df2dist list
enve.growthcurve
enve growthcurve
enve.GrowthCurve-class
enve.GrowthCurve S4 class
enveomics.R-package
Various R Functions from the Kostas Lab
enve.prune.dist
enve prune dist
enve.__prune.iter
enve prune iter
enve.__prune.reduce
enve prune reduce
enve.recplot
enve recplot
enve.recplot2
enve recplot2
enve.recplot2.changeCutoff
enve recplot2 changeCutoff
enve.RecPlot2-class
enve.RecPlot2 S4 class
enve.recplot2.corePeak
enve recplot2 corePeak
enve.recplot2.__counts
enve recplot2 counts
enve.recplot2.extractWindows
enve recplot2 extractWindows
enve.recplot2.__findPeak
enve recplot2 findPeak
enve.recplot2.findPeaks
enve recplot2 findPeaks
enve.recplot2.__findPeaks
enve recplot2 findPeaks
enve.RecPlot2.Peak-class
enve.RecPlot2.Peak S4 class
enve.recplot2.__peakHist
enve recplot2 peakHist
enve.recplot2.__whichClosestPeak
enve recplot2 whichClosestPeak
enve.tribs
enve tribs
enve.__tribs
enve tribs
enve.TRIBS-class
enve.TRIBS S4 class
enve.TRIBS.merge
enve TRIBS merge
enve.tribs.test
enve tribs test
enve.TRIBStest-class
enve.TRIBStest S4 class
growth.curves
Bacterial growth curves for three Escherichia coli mutants
phyla.counts
Counts of microbial phyla in four sites
plot.enve.GrowthCurve
plot enve GrowthCurve
plot.enve.RecPlot2
plot enve RecPlot2
plot.enve.TRIBS
plot enve TRIBS
plot.enve.TRIBStest
plot enve TRIBStest
summary.enve.GrowthCurve
summary enve GrowthCurve
summary.enve.TRIBS
summary enve TRIBS
summary.enve.TRIBStest
summary enve TRIBStest
z$-methods
~~ Methods for Function '$' ~~

Files in this package

enveomics.R
enveomics.R/NAMESPACE
enveomics.R/data
enveomics.R/data/phyla.counts.rda
enveomics.R/data/growth.curves.rda
enveomics.R/R
enveomics.R/R/tribs.R
enveomics.R/R/autoprune.R
enveomics.R/R/cliopts.R
enveomics.R/R/df2dist.R
enveomics.R/R/recplot.R
enveomics.R/R/barplot.R
enveomics.R/R/growthcurve.R
enveomics.R/R/recplot2.R
enveomics.R/README.md
enveomics.R/MD5
enveomics.R/DESCRIPTION
enveomics.R/man
enveomics.R/man/plot.enve.TRIBStest.Rd
enveomics.R/man/growth.curves.Rd
enveomics.R/man/enve.recplot2.__findPeaks.Rd
enveomics.R/man/enve.__prune.reduce.Rd
enveomics.R/man/plot.enve.RecPlot2.Rd
enveomics.R/man/enve.recplot2.findPeaks.Rd
enveomics.R/man/z$-methods.Rd
enveomics.R/man/enve.RecPlot2.Peak-class.Rd
enveomics.R/man/enve.__prune.iter.Rd
enveomics.R/man/enve.RecPlot2-class.Rd
enveomics.R/man/enve.__tribs.Rd
enveomics.R/man/enve.recplot2.__whichClosestPeak.Rd
enveomics.R/man/enve.recplot2.Rd
enveomics.R/man/enve.df2dist.Rd
enveomics.R/man/plot.enve.TRIBS.Rd
enveomics.R/man/enveomics.R-package.Rd
enveomics.R/man/enve.recplot2.__findPeak.Rd
enveomics.R/man/summary.enve.TRIBS.Rd
enveomics.R/man/enve.TRIBStest-class.Rd
enveomics.R/man/enve.recplot2.extractWindows.Rd
enveomics.R/man/enve.recplot2.corePeak.Rd
enveomics.R/man/enve.recplot2.__counts.Rd
enveomics.R/man/enve.df2dist.list.Rd
enveomics.R/man/summary.enve.GrowthCurve.Rd
enveomics.R/man/enve.df2dist.group.Rd
enveomics.R/man/enve.TRIBS.merge.Rd
enveomics.R/man/enve.prune.dist.Rd
enveomics.R/man/enve.growthcurve.Rd
enveomics.R/man/summary.enve.TRIBStest.Rd
enveomics.R/man/enve.col2alpha.Rd
enveomics.R/man/enve.recplot.Rd
enveomics.R/man/enve.barplot.Rd
enveomics.R/man/enve.recplot2.__peakHist.Rd
enveomics.R/man/enve.cliopts.Rd
enveomics.R/man/phyla.counts.Rd
enveomics.R/man/plot.enve.GrowthCurve.Rd
enveomics.R/man/enve.recplot2.changeCutoff.Rd
enveomics.R/man/enve.TRIBS-class.Rd
enveomics.R/man/enve.tribs.test.Rd
enveomics.R/man/enve.tribs.Rd
enveomics.R/man/enve.GrowthCurve-class.Rd