enveomics.R: Various R Functions from the Kostas Lab

A collection of R functions of common use in the Kostas Lab for microbial ecology.

AuthorLuis M. Rodriguez-R [aut, cre]
Date of publication2016-08-16 19:50:24
MaintainerLuis M. Rodriguez-R <lmrodriguezr@gmail.com>
LicenseArtistic-2.0
Version1.1.1
http://enve-omics.gatech.edu/

View on CRAN

Man pages

enve.barplot: enve barplot

enve.cliopts: enve cliopts

enve.col2alpha: enve col2alpha

enve.df2dist: enve df2dist

enve.df2dist.group: enve df2dist group

enve.df2dist.list: enve df2dist list

enve.growthcurve: enve growthcurve

enve.GrowthCurve-class: enve.GrowthCurve S4 class

enveomics.R-package: Various R Functions from the Kostas Lab

enve.prune.dist: enve prune dist

enve.__prune.iter: enve prune iter

enve.__prune.reduce: enve prune reduce

enve.recplot: enve recplot

enve.recplot2: enve recplot2

enve.recplot2.changeCutoff: enve recplot2 changeCutoff

enve.RecPlot2-class: enve.RecPlot2 S4 class

enve.recplot2.corePeak: enve recplot2 corePeak

enve.recplot2.__counts: enve recplot2 counts

enve.recplot2.extractWindows: enve recplot2 extractWindows

enve.recplot2.__findPeak: enve recplot2 findPeak

enve.recplot2.findPeaks: enve recplot2 findPeaks

enve.recplot2.__findPeaks: enve recplot2 findPeaks

enve.RecPlot2.Peak-class: enve.RecPlot2.Peak S4 class

enve.recplot2.__peakHist: enve recplot2 peakHist

enve.recplot2.__whichClosestPeak: enve recplot2 whichClosestPeak

enve.tribs: enve tribs

enve.__tribs: enve tribs

enve.TRIBS-class: enve.TRIBS S4 class

enve.TRIBS.merge: enve TRIBS merge

enve.tribs.test: enve tribs test

enve.TRIBStest-class: enve.TRIBStest S4 class

growth.curves: Bacterial growth curves for three Escherichia coli mutants

phyla.counts: Counts of microbial phyla in four sites

plot.enve.GrowthCurve: plot enve GrowthCurve

plot.enve.RecPlot2: plot enve RecPlot2

plot.enve.TRIBS: plot enve TRIBS

plot.enve.TRIBStest: plot enve TRIBStest

summary.enve.GrowthCurve: summary enve GrowthCurve

summary.enve.TRIBS: summary enve TRIBS

summary.enve.TRIBStest: summary enve TRIBStest

z$-methods: ~~ Methods for Function '$' ~~

Functions

$ Man page
$ Man page
$ Man page
enve.barplot Man page
enve.cliopts Man page
enve.col2alpha Man page
enve.df2dist Man page
enve.df2dist.group Man page
enve.df2dist.list Man page
enve.growthcurve Man page
enve.GrowthCurve Man page
enve.GrowthCurve-class Man page
$,enve.GrowthCurve-method Man page
enveomics.R Man page
enveomics.R-package Man page
enve.prune.dist Man page
enve.__prune.iter Man page
enve.__prune.reduce Man page
enve.recplot Man page
enve.recplot2 Man page
enve.RecPlot2 Man page
enve.recplot2.changeCutoff Man page
enve.RecPlot2-class Man page
enve.recplot2.corePeak Man page
enve.recplot2.__counts Man page
enve.recplot2.extractWindows Man page
enve.recplot2.__findPeak Man page
enve.recplot2.findPeaks Man page
enve.recplot2.__findPeaks Man page
$,enve.RecPlot2-method Man page
enve.RecPlot2.Peak Man page
enve.RecPlot2.Peak-class Man page
enve.recplot2.__peakHist Man page
$,enve.RecPlot2.Peak-method Man page
enve.recplot2.__whichClosestPeak Man page
enve.tribs Man page
enve.__tribs Man page
enve.TRIBS Man page
enve.TRIBS-class Man page
enve.TRIBS.merge Man page
enve.tribs.test Man page
enve.TRIBStest Man page
enve.TRIBStest-class Man page
growth.curves Man page
$-methods Man page
phyla.counts Man page
plot.enve.GrowthCurve Man page
plot.enve.RecPlot2 Man page
plot.enve.TRIBS Man page
plot.enve.TRIBStest Man page
summary.enve.GrowthCurve Man page
summary.enve.TRIBS Man page
summary.enve.TRIBStest Man page

Files

enveomics.R
enveomics.R/NAMESPACE
enveomics.R/data
enveomics.R/data/phyla.counts.rda
enveomics.R/data/growth.curves.rda
enveomics.R/R
enveomics.R/R/tribs.R enveomics.R/R/autoprune.R enveomics.R/R/cliopts.R enveomics.R/R/df2dist.R enveomics.R/R/recplot.R enveomics.R/R/barplot.R enveomics.R/R/growthcurve.R enveomics.R/R/recplot2.R
enveomics.R/README.md
enveomics.R/MD5
enveomics.R/DESCRIPTION
enveomics.R/man
enveomics.R/man/plot.enve.TRIBStest.Rd enveomics.R/man/growth.curves.Rd enveomics.R/man/enve.recplot2.__findPeaks.Rd enveomics.R/man/enve.__prune.reduce.Rd enveomics.R/man/plot.enve.RecPlot2.Rd enveomics.R/man/enve.recplot2.findPeaks.Rd enveomics.R/man/z$-methods.Rd enveomics.R/man/enve.RecPlot2.Peak-class.Rd enveomics.R/man/enve.__prune.iter.Rd enveomics.R/man/enve.RecPlot2-class.Rd enveomics.R/man/enve.__tribs.Rd enveomics.R/man/enve.recplot2.__whichClosestPeak.Rd enveomics.R/man/enve.recplot2.Rd enveomics.R/man/enve.df2dist.Rd enveomics.R/man/plot.enve.TRIBS.Rd enveomics.R/man/enveomics.R-package.Rd enveomics.R/man/enve.recplot2.__findPeak.Rd enveomics.R/man/summary.enve.TRIBS.Rd enveomics.R/man/enve.TRIBStest-class.Rd enveomics.R/man/enve.recplot2.extractWindows.Rd enveomics.R/man/enve.recplot2.corePeak.Rd enveomics.R/man/enve.recplot2.__counts.Rd enveomics.R/man/enve.df2dist.list.Rd enveomics.R/man/summary.enve.GrowthCurve.Rd enveomics.R/man/enve.df2dist.group.Rd enveomics.R/man/enve.TRIBS.merge.Rd enveomics.R/man/enve.prune.dist.Rd enveomics.R/man/enve.growthcurve.Rd enveomics.R/man/summary.enve.TRIBStest.Rd enveomics.R/man/enve.col2alpha.Rd enveomics.R/man/enve.recplot.Rd enveomics.R/man/enve.barplot.Rd enveomics.R/man/enve.recplot2.__peakHist.Rd enveomics.R/man/enve.cliopts.Rd enveomics.R/man/phyla.counts.Rd enveomics.R/man/plot.enve.GrowthCurve.Rd enveomics.R/man/enve.recplot2.changeCutoff.Rd enveomics.R/man/enve.TRIBS-class.Rd enveomics.R/man/enve.tribs.test.Rd enveomics.R/man/enve.tribs.Rd enveomics.R/man/enve.GrowthCurve-class.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.