enve.recplot2.findPeaks.__mow_one: Enveomics: Recruitment Plot (2) Mowing Peak Finder - Internal...

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Recruitment Plot (2) Mowing Peak Finder - Internal Ancillary Function 1

Description

Internal ancillary function (see enve.recplot2.findPeaks.mower).

Usage

enve.recplot2.findPeaks.__mow_one(
  lsd1,
  min.points,
  quant.est,
  mlv.opts,
  fitdist.opts,
  with.skewness,
  optim.rounds,
  optim.epsilon,
  n.total,
  merge.logdist,
  verbose,
  log
)

Arguments

lsd1	Vector of log-transformed sequencing depths
min.points	Minimum number of points
quant.est	Quantile estimate
mlv.opts	List of options for mlv
fitdist.opts	List of options for fitdist
with.skewness	If skewed-normal should be used
optim.rounds	Maximum number of optimization rounds
optim.epsilon	Minimum difference considered negligible
n.total	Global number of windows
merge.logdist	Attempted merge.logdist parameter
verbose	If verbose
log	If log-transformed depths

Value

Return an enve.RecPlot2.Peak object.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on May 29, 2024, 4:17 a.m.