enve.df2dist.list: Enveomics: Data Frame to Dist (List)

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Data Frame to Dist (List)

Description

Transform a dataframe (or coercible object, like a table) into a list of dist objects, one per group.

Usage

enve.df2dist.list(
  x,
  groups,
  obj1.index = 1,
  obj2.index = 2,
  dist.index = 3,
  empty.rm = TRUE,
  ...
)

Arguments

x	A dataframe (or coercible object) with at least three columns: ID of the object 1, ID of the object 2, and distance between the two objects.
groups	Named array where the IDs correspond to the object IDs, and the values correspond to the group.
obj1.index	Index of the column containing the ID of the object 1.
obj2.index	Index of the column containing the ID of the object 2.
dist.index	Index of the column containing the distance.
empty.rm	Remove incomplete matrices.
...	Any other parameters supported by enve.df2dist.

Value

Returns a list of dist objects.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 13, 2022, 5:10 p.m.