enve.prefscore | R Documentation |
Estimate preference score of species based on occupancy in biased sample sets
enve.prefscore( x, set, ignore = NULL, signif.thr, plot = TRUE, col.above = rgb(148, 17, 0, maxColorValue = 255), col.equal = rgb(189, 189, 189, maxColorValue = 255), col.below = rgb(47, 84, 150, maxColorValue = 255), ... )
x |
Occupancy matrix (logical or numeric binary) with species as rows and samples as columns |
set |
Vector indicating samples in the test set. It can be any selection vector:
boolean (same length as the number of columns in |
ignore |
Vector indicating species to ignore. It can be any selection vector with
respect to the rows in |
signif.thr |
Absolute value of the significance threshold |
plot |
Indicates if a plot should be generated |
col.above |
Color for points significantly above zero |
col.equal |
Color for points not significantly different from zero |
col.below |
Color for points significantly below zero |
... |
Any additional parameters supported by |
Returns a named vector of preference scores.
Luis M. Rodriguez-R [aut, cre]
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