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enveomics.R
To install the latest version of enveomics.R
uploaded to CRAN, execute in R:
install.packages('enveomics.R')
To install the current developer version of enveomics.R
, execute in R:
install.packages('devtools')
library('devtools')
install_github('lmrodriguezr/enveomics', subdir='enveomics.R')
enveomics.R
To load enveomics.R, simply execute:
library(enveomics.R);
And open help messages using any of the following commands:
?enveomics.R
?enve.barplot
?enve.recplot2
?enve.recplot2.compareIdentities
?enve.recplot2.changeCutoff
?enve.recplot2.findPeaks
?enve.recplot2.corePeak
?enve.recplot2.windowDepthThreshold
?enve.recplot2.extractWindows
?enve.recplot2.coordinates
?enve.recplot2.seqdepth
?enve.recplot2.ANIr
?enve.prune.dist
?enve.tribs
?enve.tribs.test
?enve.growthcurve
?enve.col.alpha
?enve.truncate
You can run some examples using these libraries in the enveomics-GUI.
For additional information on recruitment plots, see the Recruitment plots working document.
enve.selvector
and enve.prefscore
.enve.df2dist
about five-fold.enve.recplot2.extractWindows
and
enve.recplot2.coordinates
to ease automation. Thanks to Tomeu Viver and
Roth Conrad for troubleshooting.id.breaks
was changed from
300 to 60.pos.breaks.tsv
for enve.recplot2
.enve.recplot2.windowDepthThreshold
.panel.fun
for plot.enve.RecPlot2
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