enve.recplot2.seqdepth: Enveomics: Recruitment Plot (2) Sequencing Depth

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Recruitment Plot (2) Sequencing Depth

Description

Calculate the sequencing depth of the given window(s).

Usage

enve.recplot2.seqdepth(x, sel, low.identity = FALSE)

Arguments

x	enve.RecPlot2 object.
sel	Window(s) for which the sequencing depth is to be calculated. If not passed, it returns the sequencing depth of all windows.
low.identity	A logical indicating if the sequencing depth is to be estimated only with low-identity matches. By default, only high-identity matches are used.

Value

Returns a numeric vector of sequencing depths (in bp/bp).

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 3, 2025, 9:06 p.m.