enve.RecPlot2.Peak-class: Enveomics: Recruitment Plot (2) Peak - S4 Class
In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

enve.RecPlot2.Peak-class

R Documentation

Enveomics: Recruitment Plot (2) Peak - S4 Class

Enve-omics representation of a peak in the sequencing depth histogram of a Recruitment plot (see enve.recplot2.findPeaks).

dist: (character) Distribution of the peak. Currently supported: norm (normal) and sn (skew-normal).
values: (numeric) Sequencing depth values predicted to conform the peak.
values.res: (numeric) Sequencing depth values not explained by this or previously identified peaks.
mode: (numeric) Seed-value of mode anchoring the peak.
param.hat: (list) Parameters of the distribution. A list of two values if dist=norm (sd and mean), or three values if dist=sn(omega=scale, alpha=shape, and xi=location). Note that the "dispersion" parameter is always first and the "location" parameter is always last.
n.hat: (numeric) Number of bins estimated to be explained by this peak. This should ideally be equal to the length of values, but it's not an integer.
n.total: (numeric) Total number of bins from which the peak was extracted. I.e., total number of position bins with non-zero sequencing depth in the recruitment plot (regardless of peak count).
err.res: (numeric) Error left after adding the peak (mower) or log-likelihood (em or emauto).
merge.logdist: (numeric) Attempted merge.logdist parameter.
seq.depth: (numeric) Best estimate available for the sequencing depth of the peak (centrality).
log: (logical) Indicates if the estimation was performed in natural logarithm space.