enve.TRIBStest-class: Enveomics: TRIBS Test S4 Class

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: TRIBS Test S4 Class

Description

Test of significance of overclustering or overdispersion in a selected set of objects with respect to the entire set (see enve.TRIBS). This object can be produced by enve.tribs.test and supports S4 methods plot and summary.

Slots

pval.gt

(numeric) P-value for the overdispersion test.

pval.lt

(numeric) P-value for the overclustering test.

all.dist

(numeric) Empiric PDF of distances for the entire dataset (subsampled at selection size).

sel.dist

(numeric) Empiric PDF of distances for the selected objects (without subsampling).

diff.dist

(numeric) Empiric PDF of the difference between all.dist and sel.dist. The p-values are estimating by comparing areas in this PDF greater than and lesser than zero.

dist.mids

(numeric) Midpoints of the empiric PDFs of distances.

diff.mids

(numeric) Midpoints of the empiric PDF of difference of distances.

call

(call) Call producing this object.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 3, 2025, 9:06 p.m.