enve.RecPlot2-class: Enveomics: Recruitment Plot (2) - S4 Class

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Recruitment Plot (2) - S4 Class

Description

Enve-omics representation of Recruitment plots. This object can be produced by enve.recplot2 and supports S4 method plot.

Slots

counts

(matrix) Counts as a two-dimensional histogram.

pos.counts.in

(numeric) Counts of in-group hits per position bin.

pos.counts.out

(numeric) Counts of out-group hits per position bin.

id.counts

(numeric) Counts per ID bin.

id.breaks

(numeric) Breaks of identity bins.

pos.breaks

(numeric) Breaks of position bins.

pos.names

(character) Names of the position bins.

seq.breaks

(numeric) Breaks of input sequences.

peaks

(list) Peaks identified in the recplot. Limits of the subject sequences after concatenation.

seq.names

(character) Names of the subject sequences.

id.metric

(character) Metric used as 'identity'.

id.ingroup

(logical) Identity bins considered in-group.

call

(call) Call producing this object.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 3, 2025, 9:06 p.m.