enve.recplot2.windowDepthThreshold: Enveomics: Recruitment Plot (2) Window Depth Threshold

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Recruitment Plot (2) Window Depth Threshold

Description

Identifies the threshold below which windows should be identified as variable or absent.

Usage

enve.recplot2.windowDepthThreshold(
  rp,
  peak,
  lower.tail = TRUE,
  significance = 0.05
)

Arguments

rp	Recruitment plot, an enve.RecPlot2 object.
peak	Peak, an enve.RecPlot2.Peak object. If list, it is assumed to be a list of enve.RecPlot2.Peak objects, in which case the core peak is used (see enve.recplot2.corePeak).
lower.tail	If FALSE, it returns windows significantly above the peak in sequencing depth.
significance	Significance threshold (alpha) to select windows.

Value

Returns a float. The units are depth if the peaks were estimated in linear scale, or log-depth otherwise (peak$log).

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 13, 2022, 5:10 p.m.