enve.recplot2.ANIr: Enveomics: Recruitment Plot (2) ANI Estimate

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Recruitment Plot (2) ANI Estimate

Description

Estimate the Average Nucleotide Identity from reads (ANIr) from a recruitment plot.

Usage

enve.recplot2.ANIr(x, range = c(0, Inf))

Arguments

x	enve.RecPlot2 object.
range	Range of identities to be considered. By default, the full range is used (note that the upper boundary is Inf and not 100 because recruitment plots can also be built with bit-scores). To use only intra-population matches (with identities), use c(95, 100). To use only inter-population values, use c(0, 95).

Value

A numeric value indicating the ANIr (as percentage).

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on May 29, 2024, 4:17 a.m.