enviGCMS: GC-MS Data Analysis for Environmental Science
Version 0.1.1

Gas Chromatography-Mass Spectrometer(GC-MS) Data Analysis for Environmental Science. This package covered topics such as raw data process, molecular isotope ratio, matrix effects, etc. in environmental analysis.

AuthorMiao YU [aut, cre]
Date of publication2016-11-30 14:55:19
MaintainerMiao YU <yufreecas@gmail.com>
LicenseGPL-2
Version0.1.1
URL https://github.com/yufree/enviGCMS
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("enviGCMS")

Getting started

README.md
Data analysis of GC-MS in Envrionmental Science

Popular man pages

combinemd: Combine two or more matrix
comparems: substrict two GC-MS data
Getisotopologues: Get the selected isotopologues at certain MS data
getsubmd: Subset the data mass spectrum of certain retention time and...
plotkms: plot the kendrick mass defect diagram
plotms: plot GC-MS data as a heatmap
plott: plot GC-MS data as a heatmap for constant speed of...
See all...

All man pages Function index File listing

Man pages

batch: Get the MIR and related information from the files
combinemd: Combine two or more matrix
comparems: substrict two GC-MS data
findline: find line of the regression model
GetIntegration: GetIntegration was mainly used for get the intergration of...
Getisotopologues: Get the selected isotopologues at certain MS data
getmd: import data and return the annotated matrix for GC-MS
getsubmd: Subset the data mass spectrum of certain retention time and...
Integration: Just intergrate data according to fixed rt and fixed noise...
ma: filter data by average moving box
plotgroup: Plot the response group of GC-MS
plothist: plot the density of the GC-MS data with EM algorithm to...
plotint: plot the information of intergretion
plotintslope: plot the information of intergretion
plotkms: plot the kendrick mass defect diagram
plotms: plot GC-MS data as a heatmap
plotmsrt: Plot EIC of certain m/z and return dataframe for intergration
plotrtms: Plot mass spectrum of certain retention time and return mass...
plotsms: Plot the intensity distribution of GC-MS
plotsub: Plot the backgrond of data
plott: plot GC-MS data as a heatmap for constant speed of...
plottic: Plot Total Ion Chromatogram (TIC)
qbatch: Get the MIR from the file
writeMSP: Write MSP files for NIST search

Functions

GetIntegration Man page Source code
Getisotopologues Man page Source code
Integration Man page Source code
batch Man page Source code
combinemd Man page Source code
comparems Man page Source code
findline Man page Source code
getmd Man page Source code
getsubmd Man page Source code
ma Man page Source code
plotgroup Man page Source code
plothist Man page Source code
plotint Man page Source code
plotintslope Man page Source code
plotkms Man page Source code
plotms Man page Source code
plotmsrt Man page Source code
plotrtms Man page Source code
plotsms Man page Source code
plotsub Man page Source code
plott Man page Source code
plottic Man page Source code
qbatch Man page Source code
writeMSP Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/GCMSDA.Rmd
inst/doc/GCMSDA.html
NAMESPACE
R
R/peaks.R
R/general.R
R/io.R
R/matrix.R
vignettes
vignettes/GCMSDA.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/findline.Rd
man/plott.Rd
man/Getisotopologues.Rd
man/getsubmd.Rd
man/writeMSP.Rd
man/comparems.Rd
man/plotrtms.Rd
man/plotgroup.Rd
man/combinemd.Rd
man/getmd.Rd
man/plotkms.Rd
man/batch.Rd
man/Integration.Rd
man/plotintslope.Rd
man/plotint.Rd
man/qbatch.Rd
man/plotsms.Rd
man/plottic.Rd
man/plothist.Rd
man/GetIntegration.Rd
man/plotsub.Rd
man/plotmsrt.Rd
man/plotms.Rd
man/ma.Rd
enviGCMS documentation built on May 19, 2017, 9:20 p.m.

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