getupload: Get the csv files from xcmsset/XCMSnExp/list object

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

Get the csv files from xcmsset/XCMSnExp/list object

Description

Get the csv files from xcmsset/XCMSnExp/list object

Usage

getupload(
  xset,
  method = "medret",
  value = "into",
  name = "Peaklist",
  type = "m",
  mzdigit = 4,
  rtdigit = 1
)

Arguments

xset	the xcmsset/XCMSnExp/list object which you want to submitted to Metaboanalyst
method	parameter for groupval function
value	parameter for groupval function
name	file name
type	m means Metaboanalyst, a means xMSannotator, o means full information csv
mzdigit	m/z digits of row names of data frame
rtdigit	retention time digits of row names of data frame

Value

dataframe with data needed for Metaboanalyst/xMSannotator/pmd if your want to perform local analysis.

See Also

getdata, getmzrt

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
getupload(xset)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.