getbgremove: Get the peak list with blank samples' peaks removed
In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

getbgremove

R Documentation

Get the peak list with blank samples' peaks removed

Description

Get the peak list with blank samples' peaks removed

Usage

getbgremove(
  xset,
  method = "medret",
  intensity = "into",
  file = NULL,
  rsdcf = 30,
  inscf = 1000
)

Arguments

`xset`	the xcmsset object with blank and certain group samples' data
`method`	parameter for groupval function
`intensity`	parameter for groupval function
`file`	file name for further annotation, default NULL
`rsdcf`	rsd cutoff for peaks, default 30
`inscf`	intensity cutoff for peaks, default 1000

Value

diff report

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
xset <- getdata(cdfpath, pmethod = ' ')
getbgremove(xset)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.