getgrouprep: Get the report for samples with biological and technique...

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

Get the report for samples with biological and technique replicates in different groups

Description

Get the report for samples with biological and technique replicates in different groups

Usage

getgrouprep(
  xset,
  file = NULL,
  method = "medret",
  intensity = "into",
  rsdcf = 30,
  inscf = 1000
)

Arguments

xset	the xcmsset object all of samples with technique replicates
file	file name for the peaklist to MetaboAnalyst
method	parameter for groupval function
intensity	parameter for groupval function
rsdcf	rsd cutoff for peaks, default 30
inscf	intensity cutoff for peaks, default 1000

Value

dataframe with mean, standard deviation and RSD for those technique replicates & biological replicates combined with raw data in different groups if file are defaults NULL.

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.