getdoe: Generate the group level rsd and average intensity based on...

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

Generate the group level rsd and average intensity based on DoE,

Description

Generate the group level rsd and average intensity based on DoE,

Usage

getdoe(
  list,
  inscf = 5,
  rsdcf = 100,
  rsdcft = 30,
  imputation = "l",
  tr = FALSE,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

list	list with data as peaks list, mz, rt and group information
inscf	Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
rsdcf	the rsd cutoff of all peaks in all group
rsdcft	the rsd cutoff of all peaks in technical replicates
imputation	parameters for 'getimputation' function method
tr	logical. TRUE means dataset with technical replicates at the base level folder
BPPARAM	An optional BiocParallelParam instance determining the parallel back-end to be used during evaluation.

Value

list with group mean, standard deviation, and relative standard deviation for all peaks, and filtered peaks index

See Also

getimputation, getpower

Examples

data(list)
getdoe(list)

enviGCMS documentation built on April 3, 2025, 11:07 p.m.