Description Usage Arguments Value Examples

GetIntegration was mainly used for get the intergration of certain ion's chromatogram data and plot the data

1 2 | ```
GetIntegration(data, rt = c(8.3, 9), n = 5, m = 5, slope = c(2, 2),
baseline = 10, noslope = T, smoothit = T, half = F)
``` |

`data` |
file should be a dataframe with the first column RT and second column intensity of the SIM ions. |

`rt` |
a rough RT range contained only one peak to get the area |

`n` |
points in the moving average smooth box, default value is 5 |

`m` |
numbers of points for regression to get the slope |

`slope` |
the threshold value for start/stop peak as percentage of max slope |

`baseline` |
numbers of the points for the baseline of the signal |

`noslope` |
logical, if using a horizon line to get area or not |

`smoothit` |
logical, if using an average smooth box or not. If using, n will be used |

`half` |
logical, if using the left half peak to caculate the area |

intergration data such as peak area, peak hight, signal and the slope data.

1 2 3 4 |

enviGCMS documentation built on April 26, 2018, 1:04 a.m.

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