Files in functClust

Functional Clustering of Redundant Components of a System

tests/testthat.R tests/testthat/test.R tests/testthat/test_data.R R/fclust.R R/boot_fclust.R R/stats.R R/calibrating.R R/labelling.R R/validating.R R/tools.R R/plot_fclust.R R/test_fclust.R R/validating_jack.R R/validating_loo.R R/constants.R R/functClust-package.R R/fexport.R R/predicting.R R/data.R R/clustering.R man/plot_motifs_box.Rd man/compact_index.Rd man/test_dependent_R2mse.Rd man/stirling.Rd man/validate_amean_byelt_LOO.Rd man/validate_gmean_byelt_jack_xpr.Rd man/mark_string.Rd man/CedarCreek.2004.res.Rd man/validate_amean_bymot_jack.Rd man/plot_ftree.Rd man/list_in_quote.Rd man/plot_fperf.Rd man/predict_amean_bymot.Rd man/R2mse.Rd man/fcolours.Rd man/gmean_bymot_jack.Rd man/sort_components.Rd man/calibrate_gmean_bymot_xpr.Rd man/fboot_read.Rd man/delstr_end.Rd man/fletters.Rd man/mse.Rd man/validate_gmean_byelt_LOO_xpr.Rd man/ftest.Rd man/check_plot_options.Rd man/fboot_write.Rd man/fsymbols.Rd man/validate_amean_byelt_LOO_xpr.Rd man/fboot_plot.Rd man/fnbdigits.Rd man/read_ftrees.Rd man/nb_tests.Rd man/cut_ftree.Rd man/build_random_matrix.Rd man/check_ftree.Rd man/sort_ftree.Rd man/validate_ftree.Rd man/validate_using_cross_validation.Rd man/fboot_assemblages.Rd man/gmean_byelt_LOO.Rd man/notify_fclust.Rd man/validate_amean_bymot_LOO_xpr.Rd man/argchr.Rd man/plot_ftrees.Rd man/fboot_performances.Rd man/test_dependent_R2.Rd man/compute_ftree_stats.Rd man/wasd.Rd man/ftest_plot_performances.Rd man/gmean_byelt.Rd man/make_fclust.Rd man/calibrate_amean_byelt.Rd man/concat_by_line.Rd man/rss_clustering.Rd man/plot_components_box.Rd man/fepsilon.Rd man/first_argchr.Rd man/amean_bymot_LOO.Rd man/fclust_write.Rd man/wamean.Rd man/is_binary.Rd man/compute_motif_stats.Rd man/CedarCreek.2004.2006.dat.Rd man/validate_gmean_byelt_jack.Rd man/gsd.Rd man/calibrate_gmean_bymot.Rd man/argmax.Rd man/affect_motifs.Rd man/wgmean.Rd man/plot_components_content.Rd man/index_inturn.Rd man/plot_fmotif.Rd man/wgsd.Rd man/validate_gmean_bymot_jack.Rd man/CedarCreek.2004.2006.test.performances.Rd man/amean.Rd man/points_sd.Rd man/divisive_ftree.Rd man/fclust.Rd man/char_to_int.Rd man/plot_fcomp.Rd man/name_clusters.Rd man/add_ass_names.Rd man/ftest_plot_components.Rd man/binary_to_logical.Rd man/mean_fct.Rd man/first_argmin.Rd man/validate_gmean_byelt_LOO.Rd man/extend_vector.Rd man/plot_prediction_LOO.Rd man/plot_fass.Rd man/test_posthoc.Rd man/logical_to_binary.Rd man/agglomerative_ftree.Rd man/predict_gmean_bymot.Rd man/read_fstats.Rd man/plot_clusters_content.Rd man/ftest_plot.Rd man/fboot.Rd man/reverse_table.Rd man/ftest_write.Rd man/delstr_begin.Rd man/fstd_colour.Rd man/rmse.Rd man/fboot_write_one_point.Rd man/AICc.Rd man/fclust_read.Rd man/ftest_assemblages.Rd man/gmean_byelt_jack.Rd man/simplify_ftree.Rd man/CedarCreek.2004.2006.boot.assemblages.Rd man/fboot_one_point.Rd man/sort_motifs.Rd man/shift_affectElt.Rd man/check_repeat.Rd man/fwindow.Rd man/validate_amean_byelt_jack.Rd man/AIC_.Rd man/ftest_performances.Rd man/CedarCreek.2004.2006.test.assemblages.Rd man/validate_amean_bymot_jack_xpr.Rd man/format_fclust.Rd man/remove_components.Rd man/ftest_components.Rd man/compute_fit_stats.Rd man/pvalue_dependent_R2mse.Rd man/predict_gmean_byelt.Rd man/argmin.Rd man/calibrate_gmean_byelt.Rd man/first_argmax.Rd man/name_motifs.Rd man/pmse.Rd man/rss_total.Rd man/plot_motifs_infos.Rd man/validate_gmean_bymot_LOO_xpr.Rd man/read_foptions.Rd man/gmean.Rd man/plot_stats.Rd man/extend_letters.Rd man/ftest_read.Rd man/maffect_motifs.Rd man/CedarCreek.2004.2006.res.Rd man/gmean_bymot_LOO.Rd man/asd.Rd man/check_foption.Rd man/calibrate_gmean_byelt_xpr.Rd man/validate_gmean_bymot_LOO.Rd man/read_finputs.Rd man/plot_motifs_content.Rd man/calibrate_amean_bymot_xpr.Rd man/ftest_plot_assemblages.Rd man/R2.Rd man/validate_amean_bymot_LOO.Rd man/amean_byelt.Rd man/CedarCreek.2004.2006.boot.performances.Rd man/amean_byelt_LOO.Rd man/plot_by_page.Rd man/functClust-package.Rd man/fit_ftree.Rd man/validate_amean_byelt_jack_xpr.Rd man/amean_byelt_jack.Rd man/plot_motifs_histo.Rd man/validate_gmean_bymot_jack_xpr.Rd man/predict_performance.Rd man/sort_matrix.Rd man/calibrate_amean_byelt_xpr.Rd man/calibrate_amean_bymot.Rd man/fclust_predict.Rd man/fboot_read_one_point.Rd man/read_fmatrices.Rd man/fpvalue.Rd man/amean_bymot_jack.Rd man/plot_prediction_simple.Rd man/rss.Rd man/predict_amean_byelt.Rd man/CedarCreek.2004.2006.test.components.Rd man/fclust_plot.Rd man/calibrate_byminrss.Rd man/complete_ftree.Rd inst/doc/c.Options_fclust.R inst/doc/a.Overview.R inst/doc/a.Overview.Rmd inst/doc/d.Options_fclust_plot.Rmd inst/doc/f.Test_clustering.Rmd inst/doc/d.Options_fclust_plot.R inst/doc/b.Simplest_use.Rmd inst/doc/c.Options_fclust.Rmd inst/doc/b.Simplest_use.R inst/doc/e.Multi_functionality.Rmd inst/doc/e.Multi_functionality.R inst/doc/f.Test_clustering.R vignettes/a.Overview.Rmd vignettes/d.Options_fclust_plot.Rmd vignettes/f.Test_clustering.Rmd vignettes/b.Simplest_use.Rmd vignettes/c.Options_fclust.Rmd vignettes/e.Multi_functionality.Rmd