dot-o2tH: Convert a one-row haplotype to a two-row haplotype
In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
.o2tH R Documentation
Convert a one-row haplotype to a two-row haplotype
Description
Converts a haplotype matrix where each individual is represented by one row
and alleles are stored in alternating columns (1st allele, 2nd allele, ...)
into a two-row-per-individual representation.
Usage
.o2tH(haplotype)
Arguments
haplotype
A haplotype object:
a matrix with individuals in rows and allele columns in pairs
(i.e. ncol(haplotype) must be even).
Details
Internally, any allele code of '2' is converted to '0' before conversion.
Value
An integer matrix in a two-row-per-individual format with
2 * nrow(haplotype) rows and ncol(haplotype) / 2 columns.
Row names are interleaved using the original individual names.
hsphase documentation built on Feb. 17, 2026, 5:07 p.m.
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| .o2tH | R Documentation |
Convert a one-row haplotype to a two-row haplotype
Description
Converts a haplotype matrix where each individual is represented by one row and alleles are stored in alternating columns (1st allele, 2nd allele, ...) into a two-row-per-individual representation.
Usage
.o2tH(haplotype)
Arguments
haplotype |
A haplotype object:
|
Details
Internally, any allele code of '2' is converted to '0' before conversion.
Value
An integer matrix in a two-row-per-individual format with
2 * nrow(haplotype) rows and ncol(haplotype) / 2 columns.
Row names are interleaved using the original individual names.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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