switchDetector: Switch Detector
In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
View source: R/switchDetector.R
switchDetector R Documentation
Switch Detector
Description
Detect switch errors in the haplotypes of a half-sib family.
Usage
switchDetector(groupMatrix)
Arguments
groupMatrix
matrix. Group matrix generated by groupMatSingle.
Value
A list of integer vectors. The list length equals the number of individuals.
Each vector contains the locations of detected switch errors for that individual.
See Also
groupMatSingle
Examples
haplotype <- .simulateHalfsib(8, 3000, type = "haplotype")$phased
switches <- list(2500,0,0,1200,c(1000,2000),500,2000,0)
haplotype2 <- addSwitch(haplotype, switches, 0)
gMat <- groupMatSingle(haplotype2, 100, 2, "haplotype")
switchDetector(gMat)
hsphase documentation built on Feb. 17, 2026, 5:07 p.m.
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View source: R/switchDetector.R
| switchDetector | R Documentation |
Switch Detector
Description
Detect switch errors in the haplotypes of a half-sib family.
Usage
switchDetector(groupMatrix)
Arguments
groupMatrix |
|
Value
A list of integer vectors. The list length equals the number of individuals.
Each vector contains the locations of detected switch errors for that individual.
See Also
groupMatSingle
Examples
haplotype <- .simulateHalfsib(8, 3000, type = "haplotype")$phased
switches <- list(2500,0,0,1200,c(1000,2000),500,2000,0)
haplotype2 <- addSwitch(haplotype, switches, 0)
gMat <- groupMatSingle(haplotype2, 100, 2, "haplotype")
switchDetector(gMat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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