| aalenfrailty | Aalen frailty model |
| aalenMets | Fast additive hazards model with robust standard errors |
| back2timereg | Convert to timereg object |
| base1cumhaz | rate of CRBSI for HPN patients of Copenhagen |
| base44cumhaz | rate of Occlusion/Thrombosis complication for catheter of HPN... |
| base4cumhaz | rate of Mechanical (hole/defect) complication for catheter of... |
| basehazplot.phreg | Plotting the baslines of stratified Cox |
| bicomprisk | Estimation of concordance in bivariate competing risks data |
| BinAugmentCifstrata | Augmentation for Binomial regression based on stratified... |
| binomial.twostage | Fits Clayton-Oakes or bivariate Plackett (OR) models for... |
| binreg | Binomial Regression for censored competing risks data |
| binregATE | Average Treatment effect for censored competing risks data... |
| binregCasewise | Estimates the casewise concordance based on Concordance and... |
| binregG | G-estimator for binomial regression model (Standardized... |
| binregTSR | 2 Stage Randomization for Survival Data or competing Risks... |
| biprobit | Bivariate Probit model |
| blocksample | Block sampling |
| bmt | The Bone Marrow Transplant Data |
| Bootphreg | Wild bootstrap for Cox PH regression |
| bptwin | Liability model for twin data |
| casewise | Estimates the casewise concordance based on Concordance and... |
| casewise.test | Estimates the casewise concordance based on Concordance and... |
| cif | Cumulative incidence with robust standard errors |
| cifreg | CIF regression |
| ClaytonOakes | Clayton-Oakes model with piece-wise constant hazards |
| cluster.index | Finds subjects related to same cluster |
| concordanceCor | Concordance Computes concordance and casewise concordance |
| cor.cif | Cross-odds-ratio, OR or RR risk regression for competing... |
| count.history | Counts the number of previous events of two types for... |
| covarianceRecurrent | Estimation of covariance for bivariate recurrent events with... |
| daggregate | aggregating for for data frames |
| Dbvn | Derivatives of the bivariate normal cumulative distribution... |
| dby | Calculate summary statistics grouped by |
| dcor | summary, tables, and correlations for data frames |
| dcut | Cutting, sorting, rm (removing), rename for data frames |
| dermalridges | Dermal ridges data (families) |
| dermalridgesMZ | Dermal ridges data (monozygotic twins) |
| diabetes | The Diabetic Retinopathy Data |
| divide.conquer | Split a data set and run function |
| divide.conquer.timereg | Split a data set and run function from timereg and aggregate |
| dlag | Lag operator |
| doubleFGR | Double CIF Fine-Gray model with two causes |
| dprint | list, head, print, tail |
| drcumhaz | Rate for leaving HPN program for patients of Copenhagen |
| dreg | Regression for data frames with dutility call |
| drelevel | relev levels for data frames |
| dsort | Sort data frame |
| dspline | Simple linear spline |
| dtable | tables for data frames |
| dtransform | Transform that allows condition |
| easy.binomial.twostage | Fits two-stage binomial for describing depdendence in... |
| Effbinreg | Efficient IPCW for binary data |
| EVaddGam | Relative risk for additive gamma model |
| eventpois | Extract survival estimates from lifetable analysis |
| EventSplit | Event split with two time-scales, time and gaptime |
| familycluster.index | Finds all pairs within a cluster (family) |
| familyclusterWithProbands.index | Finds all pairs within a cluster (famly) with the proband... |
| fast.approx | Fast approximation |
| fast.pattern | Fast pattern |
| fast.reshape | Fast reshape |
| FG_AugmentCifstrata | Augmentation for Fine-Gray model based on stratified NPMLE... |
| ghaplos | ghaplos haplo-types for subjects of haploX data |
| glm_IPTW | IPTW GLM, Inverse Probaibilty of Treatment Weighted GLM |
| gofG.phreg | Stratified baseline graphical GOF test for Cox covariates in... |
| gofM.phreg | GOF for Cox covariates in PH regression |
| gof.phreg | GOF for Cox PH regression |
| gofZ.phreg | GOF for Cox covariates in PH regression |
| Grandom.cif | Additive Random effects model for competing risks data for... |
| hapfreqs | hapfreqs data set |
| haplo.surv.discrete | Discrete time to event haplo type analysis |
| haploX | haploX covariates and response for haplo survival discrete... |
| internal | For internal use |
| interval.logitsurv.discrete | Discrete time to event interval censored data |
| ipw | Inverse Probability of Censoring Weights |
| ipw2 | Inverse Probability of Censoring Weights |
| km | Kaplan-Meier with robust standard errors |
| lifecourse | Life-course plot |
| lifetable.matrix | Life table |
| LinSpline | Simple linear spline |
| logitSurv | Proportional odds survival model |
| mediatorSurv | Mediation analysis in survival context |
| medweight | Computes mediation weights |
| melanoma | The Melanoma Survival Data |
| mena | Menarche data set |
| mets.options | Set global options for 'mets' |
| mets-package | Analysis of Multivariate Events |
| migr | Migraine data |
| mlogit | Multinomial regression based on phreg regression |
| multcif | Multivariate Cumulative Incidence Function example data set |
| np | np data set |
| phreg | Fast Cox PH regression |
| phreg_IPTW | IPTW Cox, Inverse Probaibilty of Treatment Weighted Cox... |
| phregR | Fast Cox PH regression and calculations done in R to make... |
| phreg_rct | Lu-Tsiatis More Efficient Log-Rank for Randomized studies... |
| plack.cif | plack Computes concordance for or.cif based model, that is... |
| pmvn | Multivariate normal distribution function |
| predict.phreg | Predictions from proportional hazards model |
| print.casewise | prints Concordance test |
| prob.exceed.recurrent | Estimation of probability of more that k events for recurrent... |
| prt | Prostate data set |
| random.cif | Random effects model for competing risks data |
| rchaz | Simulation of Piecewise constant hazard model (Cox). |
| rchazC | Piecewise constant hazard distribution |
| rcrisk | Simulation of Piecewise constant hazard models with two... |
| recreg | Recurrent events regression with terminal event |
| recurrentMarginal | Fast recurrent marginal mean when death is possible |
| reexports | Objects exported from other packages |
| resmeanATE | Average Treatment effect for Restricted Mean for censored... |
| resmeanIPCW | Restricted IPCW mean for censored survival data |
| resmean.phreg | Restricted mean for stratified Kaplan-Meier or Cox model with... |
| rpch | Piecewise constant hazard distribution |
| simAalenFrailty | Simulate from the Aalen Frailty model |
| sim.cause.cox | Simulation of cause specific from Cox models. |
| sim.cif | Simulation of output from Cumulative incidence regression... |
| simClaytonOakes | Simulate from the Clayton-Oakes frailty model |
| simClaytonOakesWei | Simulate from the Clayton-Oakes frailty model |
| sim.cox | Simulation of output from Cox model. |
| simMultistate | Simulation of illness-death model |
| simRecurrentII | Simulation of recurrent events data based on cumulative... |
| simRecurrentTS | Simulation of recurrent events data based on cumulative... |
| summary.cor | Summary for dependence models for competing risks |
| summaryGLM | Reporting OR (exp(coef)) from glm with binomial link and glm... |
| survivalG | G-estimator for Cox and Fine-Gray model |
| survival.twostage | Twostage survival model for multivariate survival data |
| test.conc | Concordance test Compares two concordance estimates |
| tetrachoric | Estimate parameters from odds-ratio |
| TRACE | The TRACE study group of myocardial infarction |
| ttpd | ttpd discrete survival data on interval form |
| twinbmi | BMI data set |
| twin.clustertrunc | Estimation of twostage model with cluster truncation in... |
| twinlm | Classic twin model for quantitative traits |
| twinsim | Simulate twin data |
| twinstut | Stutter data set |
| twostageMLE | Twostage survival model fitted by pseudo MLE |
