API for nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data

Global functions
*.dotprops Man page
*.neuron Man page
*.neuronlist Man page
+.dotprops Man page
+.neuron Man page
+.neuronlist Man page
-.dotprops Man page
-.neuron Man page
-.neuronlist Man page
/.dotprops Man page
/.neuron Man page
/.neuronlist Man page
Cell07PNs Man page
DirectPotentialSynapses Source code
EdgeListFromSegList Source code
MBL.surf Man page
MakeStartEndList Source code
ParseAmirameshParameters Source code
PotentialSynapses Source code
PotentialSynapses.default Source code
PotentialSynapses.dotprops Source code
[.neuronlist Man page
[.neuronlistfh Man page
[<-.neuronlist Man page
affmat2cmtkparams Man page Source code
all.equal.dotprops Man page Source code
all.equal.im3d Man page Source code
all.equal.neuron Man page Source code
amiratype Man page Source code
as.cmtkreg Man page Source code
as.cmtkreg.default Man page Source code
as.cmtkreg.matrix Man page Source code
as.cmtkreg.reglist Man page Source code
as.data.frame.morphml_cell Source code
as.data.frame.neuronlist Man page Source code
as.directed.usingroot Source code
as.dotprops Man page Source code
as.hxsurf Man page Source code
as.hxsurf.mesh3d Man page Source code
as.im3d Man page Source code
as.im3d.im3d Man page Source code
as.im3d.matrix Man page Source code
as.list.neuronlistfh Source code
as.mesh3d Man page
as.mesh3d.ashape3d Man page Source code
as.mesh3d.hxsurf Man page Source code
as.neuron Man page Source code
as.neuron.data.frame Man page Source code
as.neuron.default Man page Source code
as.neuron.igraph Man page Source code
as.neuron.morphml_cell Source code
as.neuron.neuron Source code
as.neuron.ngraph Man page Source code
as.neuronlist Man page Source code
as.neuronlist.default Man page Source code
as.neuronlist.neuronlistfh Man page Source code
as.neuronlistfh Man page Source code
as.neuronlistfh.neuronlist Man page Source code
as.ngraph Man page Source code
as.ngraph.data.frame Man page Source code
as.ngraph.igraph Source code
as.ngraph.morphml_cell Source code
as.ngraph.neuron Man page Source code
as.ngraph.ngraph Source code
as.seglist Man page Source code
as.seglist.default Source code
as.seglist.igraph Man page Source code
as.seglist.list Source code
as.seglist.neuron Man page Source code
as.seglist.seglist Source code
boundingbox Man page Source code
boundingbox.character Man page Source code
boundingbox.default Man page Source code
boundingbox.im3d Man page Source code
boundingbox.list Man page Source code
boundingbox.neuron Man page
boundingbox.shape3d Man page
boundingbox<- Man page
branchpoints Man page Source code
branchpoints.default Man page Source code
branchpoints.igraph Man page Source code
branchpoints.neuron Man page Source code
c.neuronlist Man page Source code
c.reglist Man page Source code
checkLabel Source code
clampmax Man page Source code
cmtk Man page
cmtk.arg.name Source code
cmtk.bindir Man page Source code
cmtk.call Man page Source code
cmtk.dof2mat Man page Source code
cmtk.extract_affine Man page Source code
cmtk.mat2dof Man page Source code
cmtk.reformatx Man page Source code
cmtk.statistics Man page Source code
cmtk.streamxform Source code
cmtk.system2 Man page Source code
cmtk.targetvolume Man page Source code
cmtk.targetvolume.character Source code
cmtk.targetvolume.default Man page Source code
cmtk.targetvolume.im3d Man page Source code
cmtk.targetvolume.list Man page Source code
cmtk.version Man page Source code
cmtklandmarks Source code
cmtkparams2affmat Man page Source code
cmtkreg Man page Source code
cmtkreglist Man page Source code
coord2ind Man page Source code
coord2ind.default Man page Source code
copy_nl_attributes Source code
cygpath Source code
data.frame<- Man page
data.frame<-.neuronlist Man page
decode.rle Source code
dim.im3d Source code
dimnames.neuronlist Source code
dist3D_Segment_to_Segment Source code
dotprod Source code
dotprops Man page Man page Source code
dotprops.character Man page Source code
dotprops.default Man page Source code
dotprops.dotprops Man page Source code
dotprops.im3d Man page Source code
dotprops.list Source code
dotprops.neuron Man page Source code
dotprops.neuronlist Man page Source code
dotprops2swc Source code
droplevels Man page
droplevels.neuronlist Man page Source code
endpoints Man page Source code
endpoints.default Man page Source code
endpoints.igraph Man page Source code
endpoints.neuron Man page Source code
facenormals Source code
fast3dintegertable Source code
file.exists Source code
fileformats Man page Source code
fillMissing Source code
find.neuron Man page Source code
find.soma Man page Source code
flip Man page Source code
flip.array Man page Source code
flip.matrix Source code
flip.vector Source code
generic_magic_check Source code
getformatreader Man page Source code
getformatwriter Man page Source code
graph.nodes Man page Source code
head Man page
head.neuronlist Man page Source code
hxsurf Man page
ijkpos Man page Source code
im3d Man page Source code
im3d-coords Man page
im3d-io Man page
im3d2nrrdheader Source code
image.im3d Man page Source code
imexpand.grid Man page Source code
imscalebar Man page Source code
imslice Man page Source code
ind2coord Man page Source code
ind2coord.array Man page Source code
ind2coord.default Man page Source code
ind2coord.im3d Man page Source code
intersect Man page Source code
intersect.default Man page Source code
intersect.neuronlist Man page Source code
invert_reglist Man page Source code
is.amiramesh Man page Source code
is.amiramesh.im3d Source code
is.amiratype Source code
is.cmtklandmarks Source code
is.cmtkreg Man page Source code
is.dotprops Man page Source code
is.fijilandmarks Source code
is.fijitraces Man page Source code
is.im3d Man page Source code
is.neuroml Man page Source code
is.neuron Man page Source code
is.neuronlist Man page Source code
is.neuronlistfh Man page Source code
is.nrrd Man page Source code
is.swc Man page Source code
is.vaa3draw Man page Source code
kcs20 Man page
makecols Source code
mask Man page Source code
mask.im3d Man page Source code
materials Man page Source code
materials.character Man page Source code
materials.default Man page Source code
materials.hxsurf Man page Source code
mirror Man page Source code
mirror.character Man page Source code
mirror.default Man page Source code
mirror.neuronlist Man page Source code
nat Man page
nat-package Man page
ndigest Man page Source code
ndigest.default Source code
ndigest.dotprops Man page Source code
ndigest.neuron Man page Source code
ndigest.neuronlistfh Man page Source code
neuron Man page Source code
neuronlist Man page Source code
neuronlist-dataframe-methods Man page Man page
neuronlistfh Man page Man page Source code
ngraph Man page Source code
nlapply Man page Source code
nlscan Man page Source code
nmapply Man page Source code
nopen3d Man page Source code
normalise_swc Man page Source code
normbyrow Source code
npop3d Man page Source code
nrrd.datafiles Source code
nrrd.voxdims Man page Source code
nvertices Man page Source code
nvertices.default Man page Source code
nvertices.dotprops Source code
nvertices.neuron Source code
nvertices.neuronlist Man page Source code
onAttach Source code
onLoad Source code
origin Man page Source code
pan3d Man page Source code
plot.neuron Man page Source code
plot.neuronlist Man page Source code
plot3d Man page
plot3d.boundingbox Man page Source code
plot3d.character Man page Source code
plot3d.cmtkreg Man page Source code
plot3d.dotprops Man page Source code
plot3d.hxsurf Man page Source code
plot3d.neuron Man page Source code
plot3d.neuronlist Man page Source code
pointsinside Man page Source code
pointsinside.default Man page Source code
potential_synapses Man page Source code
potential_synapses.dotprops Man page Source code
potential_synapses.neuron Man page Source code
potential_synapses.neuronlist Man page Source code
process_morphml_cell Source code
projection Man page Source code
prune Man page Source code
prune.default Man page Source code
prune.dotprops Man page Source code
prune.neuron Man page Source code
prune.neuronlist Man page Source code
prune_edges Man page Source code
prune_strahler Man page Source code
prune_vertices Man page Source code
read.amiramesh Man page Source code
read.amiramesh.ascii Source code
read.amiramesh.bin Source code
read.amiramesh.header Man page Source code
read.cmtk Man page Source code
read.cmtkreg Man page Source code
read.fijixml Source code
read.hxsurf Man page Source code
read.im3d Man page Source code
read.im3d.amiramesh Source code
read.im3d.nrrd Source code
read.im3d.vaa3draw Source code
read.landmarks Man page Source code
read.landmarks.amira Source code
read.landmarks.cmtk Source code
read.landmarks.fiji Source code
read.morphml Man page Source code
read.neuron Man page Source code
read.neuron.fiji Man page Source code
read.neuron.hxlineset Source code
read.neuron.hxskel Source code
read.neuron.neuroml Man page Source code
read.neuron.swc Man page Source code
read.neuronlistfh Man page Source code
read.neurons Man page Source code
read.ngraph.swc Man page Source code
read.nrrd Man page Source code
read.nrrd.header Man page Source code
read.swc Source code
read.vaa3draw Man page Source code
read.zlib Source code
registerformat Man page Source code
reglist Man page Source code
remotesync Man page Source code
remotesync.default Source code
remotesync.neuronlistfh Man page Source code
resample Man page Source code
resample.neuron Man page Source code
resample_segment Source code
restrictToBounds Source code
rootpoints Man page Source code
rootpoints.default Man page Source code
rootpoints.igraph Man page Source code
rootpoints.neuron Man page Source code
rowbyrow Source code
scale Man page
scale.dotprops Man page Source code
scale.neuron Man page Source code
seglength Source code
seglengths Man page Source code
seglist Man page Source code
seglist2df Source code
seglist2swc Man page Source code
segmentgraph Man page Source code
set_path_for_cygwin Source code
setdiff Man page Source code
setdiff.default Man page Source code
setdiff.neuronlist Man page Source code
simplify_reglist Man page Source code
smooth_neuron Man page Source code
smooth_segment_gauss Man page Source code
smooth_segment_spline Source code
spine Man page Source code
standardNrrdType Source code
strahler_order Man page Source code
sub2ind Man page Source code
subset Man page
subset.dotprops Man page Source code
subset.hxsurf Man page Source code
subset.neuron Man page Source code
subset.neuronlist Man page Source code
summary Man page
summary.dotprops Man page Source code
summary.neuron Man page Source code
summary.neuronlist Man page Source code
swapped Source code
tail Man page
tail.neuronlist Man page Source code
thetaBetween Source code
threshold Man page Source code
threshold.im3d Man page Source code
union Man page Source code
union.default Man page Source code
union.neuronlist Man page Source code
unlinktempfiles_reglist Source code
unmask Man page Source code
voxdims Man page Source code
voxdims.character Man page Source code
voxdims.default Man page Source code
voxdims.im3d Man page Source code
with Man page
with.neuronlist Man page Source code
write.amiramesh Man page Source code
write.cmtk Man page Source code
write.cmtk.list Source code
write.cmtkreg Man page Source code
write.dotprops.swc Source code
write.hxsurf Man page Source code
write.im3d Man page Source code
write.landmarks Man page Source code
write.landmarks.amira Source code
write.landmarks.cmtk Source code
write.landmarks.fiji Source code
write.neuron Man page Source code
write.neuron.hxlineset Source code
write.neuron.hxskel Source code
write.neuron.swc Source code
write.neuronlistfh Man page Source code
write.neurons Man page Source code
write.nrrd Man page Source code
write.nrrd.header Man page Source code
write.nrrd.header.for.file Man page Source code
write.vtk Man page Source code
write.vtk.neuron Man page Source code
write.zlib Source code
xform Man page Source code
xform.character Man page Source code
xform.data.frame Man page Source code
xform.default Man page Source code
xform.dotprops Man page Source code
xform.list Man page Source code
xform.neuron Man page
xform.neuronlist Man page Source code
xform.shape3d Man page
xformimage Man page Source code
xformimage.character Man page Source code
xformimage.cmtkreg Man page Source code
xformimage.default Man page Source code
xformimage.reglist Man page Source code
xformpoints Man page Source code
xformpoints.character Man page Source code
xformpoints.cmtkreg Man page Source code
xformpoints.default Man page Source code
xformpoints.reglist Man page Source code
xprodm Source code
xyzmatrix Man page Source code
xyzmatrix.default Man page Source code
xyzmatrix.dotprops Man page Source code
xyzmatrix.hxsurf Man page Source code
xyzmatrix.igraph Man page Source code
xyzmatrix.mesh3d Man page Source code
xyzmatrix.neuron Man page Source code
xyzmatrix.neuronlist Man page Source code
xyzmatrix<- Man page
xyzmatrix<-.dotprops Man page
xyzmatrix<-.hxsurf Man page
xyzmatrix<-.igraph Man page
xyzmatrix<-.neuron Man page
xyzmatrix<-.neuronlist Man page
xyzmatrix<-.shape3d Man page
xyzpos Man page Source code
nat documentation built on Nov. 17, 2017, 7:56 a.m.