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NeuroAnatomy Toolbox for Analysis of 3D Image Data

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NeuroAnatomy Toolbox for Analysis of 3D Image Data

MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
R/nrrd-io.R R/neuron-plot.R R/neuron.R R/dotprops.R R/xform.R R/cmtk_geometry.R R/summary.R R/nat-data.R R/amiramesh-io.R R/cmtkreg.R R/nat-package.R R/xformpoints.R R/ndigest.R R/hxsurf.R R/pop3d.R R/amiralandmarks-io.R R/seglist.R R/neuron-io-amira.R R/reglist.R R/dist3D_Segment_to_Segment.R R/cmtk_io.R R/neuronlist_sets.R R/neuronlist.R R/zzz.R R/vtk-io.R R/alphashape3d.R R/vaa3draw-io.R R/neuron-io-neuroml.R R/neuron-io-fiji.R R/xformimage.R R/cmtk.R R/neuronlist_interactive_3d.R R/graph-nodes.R R/potential_synapses.R R/neuron-io.R R/im3d.R R/neuronlistfh.R R/cmtk-reformat.R R/ngraph.R R/utils.R R/coordinates.R
inst/CITATION
inst/doc/neurons-intro.Rmd inst/doc/neurons-intro.R
inst/doc/Installation.html
inst/doc/Installation.Rmd
inst/doc/neurons-intro.html
build/vignette.rds
build/partial.rdb
tests/test-all.R tests/testthat/test-ndigest.R tests/testthat/test-seglist.R tests/testthat/test-nrrd-io.R tests/testthat/test-cmtk_geometry.R tests/testthat/test-potential_synapses.R tests/testthat/test-reglist.R tests/testthat/test-hxsurf.R tests/testthat/test-neuroml-io.R tests/testthat/test-cmtkreg.R tests/testthat/test-ngraph.R tests/testthat/test-xform.R tests/testthat/test-im3d.R tests/testthat/test-.neuron-io-remote-nocran.R tests/testthat/test-cmtk_io.R tests/testthat/test-xformimage.R tests/testthat/test-.neuronlistfh-remote-nocran.R tests/testthat/test-cmtk-reformat.R tests/testthat/test-neuronlistfh.R tests/testthat/test-neuron-io.R tests/testthat/test-dotprops.R tests/testthat/test-neuron.R tests/testthat/test-pop3d.R tests/testthat/test-amiramesh-io.R tests/testthat/test-neuron-fiji-io.R tests/testthat/test-neuronlist.R tests/testthat/test-graph-nodes.R tests/testthat/test-cmtk.R tests/testthat/test-coordinates.R tests/testthat/test-xformpoints.R tests/testthat/test-summary.R tests/testthat/test-landmarks-io.R
tests/testthat/testdata/selfun_cell07.rds
tests/testthat/testdata/summary_cell07pns.rda
tests/testthat/testdata/neuron/NeuritesWithIsolatedPoints_veryshort.am
tests/testthat/testdata/neuron/testneuron_lineset.am
tests/testthat/testdata/neuron/testneuron_am3d_ascii.am.gz
tests/testthat/testdata/neuron/fitted.traces
tests/testthat/testdata/neuron/testneuron_am3d.am.gz
tests/testthat/testdata/neuron/EBT7R.am
tests/testthat/testdata/neuron/testneuron_fclineset.am.gz
tests/testthat/testdata/neuron/XT6L2.CNG.swc
tests/testthat/testdata/neuron/EBT7R.CNG.swc
tests/testthat/testdata/neuron/unfitted.swc
tests/testthat/testdata/neuron/testneuron_am3d.am
tests/testthat/testdata/neuron/testCell07PNs1_spine.rds
tests/testthat/testdata/neuron/EBT7R_nans.am
tests/testthat/testdata/neuron/MultiplePathsJoinedToMainPath.traces
tests/testthat/testdata/neuron/SequentiallyBranchingTrace.traces
tests/testthat/testdata/neuron/Neurites.am
tests/testthat/testdata/neuron/SinglePath.traces
tests/testthat/testdata/amira/VerySmallLabelField.am
tests/testthat/testdata/amira/tetrahedron_nocol.surf
tests/testthat/testdata/amira/LHMask.Labels.rle.am
tests/testthat/testdata/amira/tetrahedron.surf
tests/testthat/testdata/amira/JFRC2_neuropils_almblh_ascii.surf
tests/testthat/testdata/amira/JFRC2_MB_CA_L.rds
tests/testthat/testdata/amira/malformed_labels.surf
tests/testthat/testdata/amira/tetrahedron_badtrianglenum.surf
tests/testthat/testdata/amira/tetrahedron_notriangles.surf
tests/testthat/testdata/amira/tetrahedron-colbrace.surf
tests/testthat/testdata/amira/VerySmallLabelField.nrrd
tests/testthat/testdata/amira/AL-a_M.am
tests/testthat/testdata/amira/LHMask.zip.am
tests/testthat/testdata/amira/landmarks.am
tests/testthat/testdata/amira/tetrahedron-colswap.surf
tests/testthat/testdata/nrrd/LHMask.nrrd
tests/testthat/testdata/nrrd/FCWB_2um_mask.nrrd
tests/testthat/testdata/nrrd/datafile_listslab.nhdr
tests/testthat/testdata/nrrd/FruMARCM-F000002_seg001_03-acrop.nrrd
tests/testthat/testdata/nrrd/badenc.nhdr
tests/testthat/testdata/nrrd/dataforstats.nrrd
tests/testthat/testdata/nrrd/JFRC2-444_mask.nrrd
tests/testthat/testdata/nrrd/LHMask.nhdr
tests/testthat/testdata/nrrd/LHMask_sum.nrrd
tests/testthat/testdata/nrrd/badtype.nhdr
tests/testthat/testdata/nrrd/datafile_list.nhdr
tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4.rda
tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4_properties.rda
tests/testthat/testdata/neuroml2/catsmall.nml
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/studylist
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/registration.gz
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/settings
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/statistics
tests/testthat/testdata/cmtk/dofv2.4wshears.list/studylist
tests/testthat/testdata/cmtk/dofv2.4wshears.list/registration
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/studylist
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/registration.gz
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/settings
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/statistics
tests/testthat/testdata/cmtk/dofv1.1wshears.list/studylist
tests/testthat/testdata/cmtk/dofv1.1wshears.list/registration
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_slice.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.nhdr
tests/testthat/testdata/neuroml/level1/Simple.morph.swc
tests/testthat/testdata/neuroml/level1/Simple.morph.xml
tests/testthat/testdata/neuroml/level1/CablesIncluded.swc
tests/testthat/testdata/neuroml/level1/CablesIncluded.xml
tests/testthat/testdata/neuroml/level1/L23PyrFRB.morph.xml
tests/testthat/testdata/neuroml/level1/SimpleNeuroML.xml
tests/testthat/testdata/landmarks/JFRC2_single.points
tests/testthat/testdata/landmarks/JFRC2.points
vignettes/neurons-intro.Rmd vignettes/Installation.Rmd
vignettes/fig/neuronlist-subsets-01.png
vignettes/fig/neuronlist-01.png
data/MBL.surf.rda
data/Cell07PNs.rda
data/kcs20.rda
man/read.neurons.Rd man/im3d-io.Rd man/c.neuronlist.Rd man/flip.Rd man/find.neuron.Rd man/subset.neuronlist.Rd man/segmentgraph.Rd man/ngraph.Rd man/origin.Rd man/write.amiramesh.Rd man/is.im3d.Rd man/graph.nodes.Rd man/read.nrrd.Rd man/is.amiramesh.Rd man/cmtk.extract_affine.Rd man/MBL.surf.Rd man/affmat2cmtkparams.Rd man/dotprops-arithmetic.Rd man/setdiff.Rd man/cmtkparams2affmat.Rd man/amiramesh-io.Rd man/nview3d.Rd man/seglist2swc.Rd man/xformpoints.Rd man/unmask.Rd man/prune.Rd man/cmtk.call.Rd man/as.hxsurf.Rd man/potential_synapses.Rd man/im3d-coords.Rd man/smooth_neuron.Rd man/rootpoints.Rd man/strahler_order.Rd man/cmtk.reformatx.Rd man/write.neuron.Rd man/plot3d.neuronlist.Rd man/plot3d.dotprops.Rd man/cmtk.targetvolume.Rd man/union.Rd man/seglengths.Rd man/subset.neuron.Rd man/pan3d.Rd man/fileformats.Rd man/kcs20.Rd man/is.swc.Rd man/read.neuron.Rd man/image.im3d.Rd man/read.hxsurf.Rd man/sub-.neuronlistfh.Rd man/mirror.Rd man/intersect.Rd man/write.nrrd.Rd man/write.vtk.Rd man/read.morphml.Rd man/read.neuron.fiji.Rd man/neuron.Rd man/neuronlistfh.Rd man/dotprops.Rd man/im3d.Rd man/nat-package.Rd man/read.cmtkreg.Rd man/coord2ind.Rd man/pointsinside.Rd man/Cell07PNs.Rd man/get-set-neuronlist-data.frame.Rd man/ndigest.Rd man/plot3d.Rd man/seglist.Rd man/imslice.Rd man/clampmax.Rd man/read.neuron.neuroml.Rd man/write.neurons.Rd man/read.cmtk.Rd man/reglist.Rd man/neuronlist.Rd man/subset.dotprops.Rd man/prune_vertices.Rd man/projection.Rd man/all.equal.neuron.Rd man/find.soma.Rd man/cmtkreglist.Rd man/nopen3d.Rd man/neuron-arithmetic.Rd man/is.neuronlist.Rd man/write.cmtk.Rd man/write.hxsurf.Rd man/read.landmarks.Rd man/nrrd.voxdims.Rd man/cmtk.dof2mat.Rd man/read.neuron.swc.Rd man/threshold.Rd man/cmtkreg.Rd man/spine.Rd man/xformimage.Rd man/simplify_reglist.Rd man/subset.hxsurf.Rd man/nlscan.Rd man/all.equal.dotprops.Rd man/nvertices.Rd man/sub2ind.Rd man/boundingbox.Rd man/normalise_swc.Rd man/plot.neuronlist.Rd man/summary.neuron.Rd man/all.equal.im3d.Rd man/voxdims.Rd man/imexpand.grid.Rd man/amiratype.Rd man/mask.Rd man/scale.neuron.Rd man/is.nrrd.Rd man/npop3d.Rd man/neuronlist-dataframe-methods.Rd man/write.neuronlistfh.Rd man/plot3d.cmtkreg.Rd man/resample.Rd man/is.vaa3draw.Rd man/xyzmatrix.Rd man/as.im3d.Rd man/plot3d.hxsurf.Rd man/cmtk.mat2dof.Rd man/cmtk.statistics.Rd man/neuronlist-arithmetic.Rd man/nlapply.Rd man/xform.Rd man/ind2coord.Rd man/write.cmtkreg.Rd man/plot.neuron.Rd man/as.mesh3d.Rd man/prune_strahler.Rd man/as.neuronlist.neuronlistfh.Rd man/cmtk.version.Rd man/is.fijitraces.Rd man/materials.Rd man/is.neuroml.Rd man/plot3d.neuron.Rd man/as.neuronlist.Rd man/remotesync.Rd man/imscalebar.Rd man/cmtk.bindir.Rd man/read.vaa3draw.Rd man/read.neuronlistfh.Rd man/plot3d.boundingbox.Rd man/subset.Rd
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man/figures/hex-natverse_logo.png
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nat documentation built on Aug. 25, 2023, 5:16 p.m.

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