Files in nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data
MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
R/nrrd-io.R
R/neuron-plot.R
R/neuron.R
R/dotprops.R
R/xform.R
R/cmtk_geometry.R
R/summary.R
R/nat-data.R
R/amiramesh-io.R
R/cmtkreg.R
R/nat-package.R
R/xformpoints.R
R/ndigest.R
R/hxsurf.R
R/pop3d.R
R/amiralandmarks-io.R
R/seglist.R
R/neuron-io-amira.R
R/reglist.R
R/dist3D_Segment_to_Segment.R
R/cmtk_io.R
R/neuronlist_sets.R
R/neuronlist.R
R/zzz.R
R/vtk-io.R
R/alphashape3d.R
R/vaa3draw-io.R
R/neuron-io-neuroml.R
R/neuron-io-fiji.R
R/xformimage.R
R/cmtk.R
R/neuronlist_interactive_3d.R
R/graph-nodes.R
R/potential_synapses.R
R/neuron-io.R
R/im3d.R
R/neuronlistfh.R
R/cmtk-reformat.R
R/ngraph.R
R/utils.R
R/coordinates.R
inst/CITATION
inst/doc/neurons-intro.Rmd
inst/doc/neurons-intro.R
inst/doc/Installation.html
inst/doc/Installation.Rmd
inst/doc/neurons-intro.html
build/vignette.rds
build/partial.rdb
tests/test-all.R
tests/testthat/test-ndigest.R
tests/testthat/test-seglist.R
tests/testthat/test-nrrd-io.R
tests/testthat/test-cmtk_geometry.R
tests/testthat/test-potential_synapses.R
tests/testthat/test-reglist.R
tests/testthat/test-hxsurf.R
tests/testthat/test-neuroml-io.R
tests/testthat/test-cmtkreg.R
tests/testthat/test-ngraph.R
tests/testthat/test-xform.R
tests/testthat/test-im3d.R
tests/testthat/test-.neuron-io-remote-nocran.R
tests/testthat/test-cmtk_io.R
tests/testthat/test-xformimage.R
tests/testthat/test-.neuronlistfh-remote-nocran.R
tests/testthat/test-cmtk-reformat.R
tests/testthat/test-neuronlistfh.R
tests/testthat/test-neuron-io.R
tests/testthat/test-dotprops.R
tests/testthat/test-neuron.R
tests/testthat/test-pop3d.R
tests/testthat/test-amiramesh-io.R
tests/testthat/Rplots.pdf
tests/testthat/test-neuron-fiji-io.R
tests/testthat/test-neuronlist.R
tests/testthat/test-graph-nodes.R
tests/testthat/test-cmtk.R
tests/testthat/test-coordinates.R
tests/testthat/test-xformpoints.R
tests/testthat/test-summary.R
tests/testthat/test-landmarks-io.R
tests/testthat/testdata/selfun_cell07.rds
tests/testthat/testdata/summary_cell07pns.rda
tests/testthat/testdata/neuron/NeuritesWithIsolatedPoints_veryshort.am
tests/testthat/testdata/neuron/testneuron_lineset.am
tests/testthat/testdata/neuron/testneuron_am3d_ascii.am.gz
tests/testthat/testdata/neuron/fitted.traces
tests/testthat/testdata/neuron/testneuron_am3d.am.gz
tests/testthat/testdata/neuron/EBT7R.am
tests/testthat/testdata/neuron/testneuron_fclineset.am.gz
tests/testthat/testdata/neuron/XT6L2.CNG.swc
tests/testthat/testdata/neuron/EBT7R.CNG.swc
tests/testthat/testdata/neuron/unfitted.swc
tests/testthat/testdata/neuron/testneuron_am3d.am
tests/testthat/testdata/neuron/testCell07PNs1_spine.rds
tests/testthat/testdata/neuron/EBT7R_nans.am
tests/testthat/testdata/neuron/MultiplePathsJoinedToMainPath.traces
tests/testthat/testdata/neuron/SequentiallyBranchingTrace.traces
tests/testthat/testdata/neuron/Neurites.am
tests/testthat/testdata/neuron/SinglePath.traces
tests/testthat/testdata/amira/VerySmallLabelField.am
tests/testthat/testdata/amira/tetrahedron_nocol.surf
tests/testthat/testdata/amira/LHMask.Labels.rle.am
tests/testthat/testdata/amira/tetrahedron.surf
tests/testthat/testdata/amira/JFRC2_neuropils_almblh_ascii.surf
tests/testthat/testdata/amira/JFRC2_MB_CA_L.rds
tests/testthat/testdata/amira/malformed_labels.surf
tests/testthat/testdata/amira/tetrahedron_badtrianglenum.surf
tests/testthat/testdata/amira/tetrahedron_notriangles.surf
tests/testthat/testdata/amira/tetrahedron-colbrace.surf
tests/testthat/testdata/amira/VerySmallLabelField.nrrd
tests/testthat/testdata/amira/AL-a_M.am
tests/testthat/testdata/amira/LHMask.zip.am
tests/testthat/testdata/amira/landmarks.am
tests/testthat/testdata/amira/tetrahedron-colswap.surf
tests/testthat/testdata/nrrd/LHMask.nrrd
tests/testthat/testdata/nrrd/FCWB_2um_mask.nrrd
tests/testthat/testdata/nrrd/datafile_listslab.nhdr
tests/testthat/testdata/nrrd/FruMARCM-F000002_seg001_03-acrop.nrrd
tests/testthat/testdata/nrrd/badenc.nhdr
tests/testthat/testdata/nrrd/dataforstats.nrrd
tests/testthat/testdata/nrrd/JFRC2-444_mask.nrrd
tests/testthat/testdata/nrrd/LHMask.nhdr
tests/testthat/testdata/nrrd/LHMask_sum.nrrd
tests/testthat/testdata/nrrd/badtype.nhdr
tests/testthat/testdata/nrrd/datafile_list.nhdr
tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4.rda
tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4_properties.rda
tests/testthat/testdata/neuroml2/catsmall.nml
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/studylist
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/registration.gz
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/settings
tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/statistics
tests/testthat/testdata/cmtk/dofv2.4wshears.list/studylist
tests/testthat/testdata/cmtk/dofv2.4wshears.list/registration
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/studylist
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/registration.gz
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/settings
tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/statistics
tests/testthat/testdata/cmtk/dofv1.1wshears.list/studylist
tests/testthat/testdata/cmtk/dofv1.1wshears.list/registration
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_slice.v3draw
tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.nhdr
tests/testthat/testdata/neuroml/level1/Simple.morph.swc
tests/testthat/testdata/neuroml/level1/Simple.morph.xml
tests/testthat/testdata/neuroml/level1/CablesIncluded.swc
tests/testthat/testdata/neuroml/level1/CablesIncluded.xml
tests/testthat/testdata/neuroml/level1/L23PyrFRB.morph.xml
tests/testthat/testdata/neuroml/level1/SimpleNeuroML.xml
tests/testthat/testdata/landmarks/JFRC2_single.points
tests/testthat/testdata/landmarks/JFRC2.points
vignettes/neurons-intro.Rmd
vignettes/Installation.Rmd
vignettes/fig/neuronlist-subsets-01.png
vignettes/fig/neuronlist-01.png
data/MBL.surf.rda
data/Cell07PNs.rda
data/kcs20.rda
man/read.neurons.Rd
man/im3d-io.Rd
man/c.neuronlist.Rd
man/flip.Rd
man/find.neuron.Rd
man/subset.neuronlist.Rd
man/segmentgraph.Rd
man/ngraph.Rd
man/origin.Rd
man/write.amiramesh.Rd
man/is.im3d.Rd
man/graph.nodes.Rd
man/read.nrrd.Rd
man/is.amiramesh.Rd
man/cmtk.extract_affine.Rd
man/MBL.surf.Rd
man/affmat2cmtkparams.Rd
man/dotprops-arithmetic.Rd
man/setdiff.Rd
man/cmtkparams2affmat.Rd
man/amiramesh-io.Rd
man/nview3d.Rd
man/seglist2swc.Rd
man/xformpoints.Rd
man/unmask.Rd
man/prune.Rd
man/cmtk.call.Rd
man/as.hxsurf.Rd
man/potential_synapses.Rd
man/im3d-coords.Rd
man/smooth_neuron.Rd
man/rootpoints.Rd
man/strahler_order.Rd
man/cmtk.reformatx.Rd
man/write.neuron.Rd
man/plot3d.neuronlist.Rd
man/plot3d.dotprops.Rd
man/cmtk.targetvolume.Rd
man/union.Rd
man/seglengths.Rd
man/subset.neuron.Rd
man/pan3d.Rd
man/fileformats.Rd
man/kcs20.Rd
man/is.swc.Rd
man/read.neuron.Rd
man/image.im3d.Rd
man/read.hxsurf.Rd
man/sub-.neuronlistfh.Rd
man/mirror.Rd
man/intersect.Rd
man/write.nrrd.Rd
man/write.vtk.Rd
man/read.morphml.Rd
man/read.neuron.fiji.Rd
man/neuron.Rd
man/neuronlistfh.Rd
man/dotprops.Rd
man/im3d.Rd
man/nat-package.Rd
man/read.cmtkreg.Rd
man/coord2ind.Rd
man/pointsinside.Rd
man/Cell07PNs.Rd
man/get-set-neuronlist-data.frame.Rd
man/ndigest.Rd
man/plot3d.Rd
man/seglist.Rd
man/imslice.Rd
man/clampmax.Rd
man/read.neuron.neuroml.Rd
man/write.neurons.Rd
man/read.cmtk.Rd
man/reglist.Rd
man/neuronlist.Rd
man/subset.dotprops.Rd
man/prune_vertices.Rd
man/projection.Rd
man/all.equal.neuron.Rd
man/find.soma.Rd
man/cmtkreglist.Rd
man/nopen3d.Rd
man/neuron-arithmetic.Rd
man/is.neuronlist.Rd
man/write.cmtk.Rd
man/write.hxsurf.Rd
man/read.landmarks.Rd
man/nrrd.voxdims.Rd
man/cmtk.dof2mat.Rd
man/read.neuron.swc.Rd
man/threshold.Rd
man/cmtkreg.Rd
man/spine.Rd
man/xformimage.Rd
man/simplify_reglist.Rd
man/subset.hxsurf.Rd
man/nlscan.Rd
man/all.equal.dotprops.Rd
man/nvertices.Rd
man/sub2ind.Rd
man/boundingbox.Rd
man/normalise_swc.Rd
man/plot.neuronlist.Rd
man/summary.neuron.Rd
man/all.equal.im3d.Rd
man/voxdims.Rd
man/imexpand.grid.Rd
man/amiratype.Rd
man/mask.Rd
man/scale.neuron.Rd
man/is.nrrd.Rd
man/npop3d.Rd
man/neuronlist-dataframe-methods.Rd
man/write.neuronlistfh.Rd
man/plot3d.cmtkreg.Rd
man/resample.Rd
man/is.vaa3draw.Rd
man/xyzmatrix.Rd
man/as.im3d.Rd
man/plot3d.hxsurf.Rd
man/cmtk.mat2dof.Rd
man/cmtk.statistics.Rd
man/neuronlist-arithmetic.Rd
man/nlapply.Rd
man/xform.Rd
man/ind2coord.Rd
man/write.cmtkreg.Rd
man/plot.neuron.Rd
man/as.mesh3d.Rd
man/prune_strahler.Rd
man/as.neuronlist.neuronlistfh.Rd
man/cmtk.version.Rd
man/is.fijitraces.Rd
man/materials.Rd
man/is.neuroml.Rd
man/plot3d.neuron.Rd
man/as.neuronlist.Rd
man/remotesync.Rd
man/imscalebar.Rd
man/cmtk.bindir.Rd
man/read.vaa3draw.Rd
man/read.neuronlistfh.Rd
man/plot3d.boundingbox.Rd
man/subset.Rd
man/figures/natverse_logo.svg
man/figures/hex-natverse_logo.png
man/figures/logo.svg
