API for nlmixr
Nonlinear Mixed Effects Models in Population PK/PD
| Global functions | |
|---|---|
| %>% | Man page |
| .DollarNames.nlmixrBounds | Source code |
| .DollarNames.nlmixrFitCore | Source code |
| .DollarNames.nlmixrUI | Source code |
| .Rvmmin | Source code |
| .as.data.frame | Source code |
| .asFlx | Source code |
| .bobyqa | Source code |
| .bobyqaNLopt | Source code |
| .bodyDewrap | Source code |
| .calcCwres | Source code |
| .calcCwres0 | Source code |
| .calcIres | Source code |
| .calcNpde | Source code |
| .calcRes | Source code |
| .calcShrinkOnly | Source code |
| .calcTables | Source code |
| .captureOutput | Source code |
| .clearPipedData | Source code |
| .cloneEnv | Source code |
| .coefPar | Source code |
| .collectWarnings | Source code |
| .data.frame | Source code |
| .deparse | Source code |
| .deparse1 | Source code |
| .dontRun | Source code |
| .dvPlot | Source code |
| .fixNames | Source code |
| .fmt3 | Source code |
| .fmtInfusionData | Source code |
| .foceiPredIpredList | Source code |
| .foceiSolvePars | Source code |
| .foceiSolveWithId | Source code |
| .foceiThetaEtaParameters | Source code |
| .genOM | Source code |
| .getCorPrint | Source code |
| .getFullNlmixrVersion | Source code |
| .getParfn | Source code |
| .getPipedData | Source code |
| .getR | Source code |
| .getRelevantLhs | Source code |
| .getUif | Source code |
| .isTestthat | Source code |
| .lbfgsb3c | Source code |
| .lbfgsbLG | Source code |
| .lbfgsbO | Source code |
| .mymin | Source code |
| .nlmeCmtGenUsrFn | Source code |
| .nlminb | Source code |
| .nlmixrMd5 | Source code |
| .nlmixrTidyFixed | Source code |
| .nlmixrTidyRandom | Source code |
| .nlmixrTidyRandomPar | Source code |
| .nlmixrUpdate | Source code |
| .nloptr | Source code |
| .nmDocxPreformat | Source code |
| .nmEstMethod | Source code |
| .nmGetData | Man page Source code |
| .nmGetPrintLines | Source code |
| .nmHuxHeader | Source code |
| .nmHuxObjf | Source code |
| .nmHuxTime | Source code |
| .nmIterHist | Source code |
| .nmIterHistDoc | Source code |
| .nmMuTable | Source code |
| .notesFit | Source code |
| .npdeSim | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .pagedPrint | Source code |
| .parseOM | Source code |
| .predOnlyRx | Source code |
| .predOnlyRxDsl | Source code |
| .processLotri | Source code |
| .rbindParHistory | Source code |
| .reorderCols | Source code |
| .repSim | Source code |
| .resetCacheIfNeeded | Source code |
| .scatterPlot | Source code |
| .setCov | Source code |
| .setOfvFo | Source code |
| .setRoot | Source code |
| .setSaemExtra | Source code |
| .setupPlotData | Source code |
| .sigma | Source code |
| .simInfo | Source code |
| .slsqp | Source code |
| .ucminf | Source code |
| .updateParFixed | Source code |
| .yamlHeader | Source code |
| ACF | Man page |
| ACF.nlmixr_nlme | Source code |
| Bolus_1CPT | Man page |
| Bolus_1CPTMM | Man page |
| Bolus_2CPT | Man page |
| Bolus_2CPTMM | Man page |
| Infusion_1CPT | Man page |
| Oral_1CPT | Man page |
| RxODE | Man page |
| VarCorr | Man page |
| VarCorr.nlmixrFitCore | Source code |
| VarCorr.nlmixrNlme | Man page |
| Wang2007 | Man page |
| `$.nlmixrFitCore` | Source code |
| `$.nlmixrFitData` | Source code |
| `$.nlmixrGill83` | Source code |
| `$.nlmixrVpc` | Source code |
| `nlmixrBoundsParser.{` | Source code |
| add.dosing | Man page |
| add.sampling | Man page |
| addConfboundsToVar | Source code |
| addCovMultiple | Man page |
| addCovVar | Man page |
| addCovariate | Man page Source code |
| addCwres | Man page Source code |
| addNpde | Man page Source code |
| addTable | Man page Source code |
| as.dynmodel | Man page Source code |
| as.focei | Man page Source code |
| as.focei.dynmodel | Man page Source code |
| as.focei.nlmixrNlme | Man page |
| as.nlme | Man page Source code |
| as.nlmixrBounds | Source code |
| as.saem | Man page Source code |
| assignToEnv | Source code |
| augPred | Man page |
| augPred.nlmixrFitData | Man page |
| augPred.nlmixr_nlme | Source code |
| augPredTrans | Source code |
| augment.nlmixrFitCore | Source code |
| backwardSearch | Man page |
| bootdata | Man page Source code |
| bootplot | Man page Source code |
| bootplot.nlmixrFitCore | Man page Source code |
| bootstrapFit | Man page Source code |
| boxCox | Man page Source code |
| boxCox_ | Source code |
| calc.2LL | Man page Source code |
| calc.COV | Man page Source code |
| calcCov | Man page Source code |
| cholSE | Man page Source code |
| cholSE_ | Source code |
| configsaem | Man page |
| confint.nlmixrFitCore | Source code |
| covarSearchAuto | Man page |
| cutoff | Source code |
| do.slice | Source code |
| dynmodel | Man page Source code |
| dynmodel.mcmc | Man page Source code |
| dynmodelControl | Man page Source code |
| err.msg | Source code |
| et | Man page |
| et.nlmixrFitData | Source code |
| eventTable | Man page |
| expit | Man page |
| extractVars | Source code |
| fixed.effects | Man page |
| fixef | Man page |
| fixef.nlmixrFitCore | Source code |
| focei.eta | Man page Source code |
| focei.eta.nlmixrFitCore | Source code |
| focei.eta.nlmixrNlme | Man page |
| focei.fit | Man page |
| focei.theta | Man page Source code |
| focei.theta.nlmixrNlme | Man page |
| foceiCalcCov | Source code |
| foceiControl | Man page Source code |
| foceiFit | Man page Source code |
| foceiFit.data.frame | Man page Source code |
| foceiFit.data.frame0 | Man page Source code |
| foceiFitCpp_ | Man page Source code |
| foceiInnerLp | Source code |
| foceiLik | Source code |
| foceiNumericGrad | Source code |
| foceiOfv | Source code |
| foceiOuter | Source code |
| foceiOuterF | Source code |
| foceiOuterG | Source code |
| foceiSetup_ | Source code |
| forwardSearch | Man page |
| freeFocei | Source code |
| frwd_selection | Man page Source code |
| gauss.quad | Man page Source code |
| genOM | Source code |
| genOMinv.5 | Source code |
| genSaemUserFunction | Source code |
| gen_saem_user_fn | Man page |
| genobj | Source code |
| geom_amt | Man page |
| geom_cens | Man page |
| getBootstrapSummary | Source code |
| getData | Man page |
| getData.nlmixrFitCore | Source code |
| getFitMethod | Source code |
| getModelVars | Source code |
| getOMEGA | Man page Source code |
| getOfvType | Man page Source code |
| getVarCov | Man page |
| getVarCov.nlmixrFitCore | Source code |
| glance.nlmixrFitCore | Source code |
| gnlmm | Man page Source code |
| gnlmm2 | Man page Source code |
| gof | Man page Source code |
| gqg.mlx | Source code |
| groupedData | Man page |
| iBoxCox | Man page Source code |
| iBoxCox_ | Source code |
| iYeoJohnson | Man page Source code |
| ini | Man page Source code |
| initializeCovars | Man page |
| instant.stan.extension | Man page Source code |
| invgaussian | Man page |
| is.latex | Source code |
| likInner | Source code |
| lin_cmt | Man page Source code |
| lin_cmt_stan | Source code |
| linesearch_secant | Source code |
| llik_beta | Source code |
| llik_betabinomial | Source code |
| llik_binomial | Source code |
| llik_binomial_c | Source code |
| llik_neg_binomial | Source code |
| llik_normal | Source code |
| llik_poisson | Source code |
| llik_student_t | Source code |
| logLik.nlmixrFitCore | Source code |
| logLik.nlmixrFitData | Source code |
| logit | Man page |
| makeDummies | Man page |
| makeHockeyStick | Man page |
| mat.indices | Source code |
| metabolite | Man page |
| model | Man page Source code |
| modelBootstrap | Source code |
| multi2 | Source code Source code Source code |
| mymin | Source code |
| nlme | Man page |
| nlmeControl | Man page |
| nlmeLinCmpt | Man page |
| nlmeLinCmt | Man page |
| nlmeModList | Man page Source code |
| nlmeOde | Man page |
| nlme_gof | Man page Source code |
| nlme_lin_cmpt | Man page |
| nlme_ode | Man page |
| nlmixr | Man page Source code |
| nlmixr.function | Man page Source code |
| nlmixr.nlmixrFitCore | Man page Source code |
| nlmixr.nlmixrUI | Man page Source code |
| nlmixrAugPred | Man page Source code |
| nlmixrBounds | Man page Source code |
| nlmixrBounds.eta.names | Man page |
| nlmixrBounds.focei.upper.lower | Man page |
| nlmixrBoundsParser | Man page Source code |
| nlmixrBoundsParser.( | Man page |
| nlmixrBoundsParser.default | Source code |
| nlmixrBoundsParser.function | Source code |
| nlmixrBoundsParserUnnest | Source code |
| nlmixrBoundsPrepareFun | Source code |
| nlmixrBoundsPrepareFunComments | Source code |
| nlmixrBoundsSuggest | Source code |
| nlmixrBounds_df | Source code |
| nlmixrData | Man page Source code |
| nlmixrData.character | Man page Source code |
| nlmixrData.default | Man page Source code |
| nlmixrDynmodelConvert | Man page Source code |
| nlmixrEst | Man page Source code |
| nlmixrEst.dynmodel | Man page Source code |
| nlmixrEst.fo | Man page |
| nlmixrEst.foce | Man page |
| nlmixrEst.focei | Man page Source code |
| nlmixrEst.foi | Man page |
| nlmixrEst.nlme | Man page Source code |
| nlmixrEst.nlme.free | Man page |
| nlmixrEst.nlme.mu | Man page |
| nlmixrEst.nlme.mu.cov | Man page |
| nlmixrEst.nlmixrEst | Man page Source code |
| nlmixrEst.posthoc | Man page Source code Source code |
| nlmixrEst.saem | Man page Source code |
| nlmixrEval_ | Man page Source code |
| nlmixrFitUpdateParams | Source code |
| nlmixrGill83 | Man page Source code |
| nlmixrGill83_ | Source code |
| nlmixrGradFun | Man page Source code |
| nlmixrGrad_ | Man page Source code |
| nlmixrHess | Man page Source code |
| nlmixrHess_ | Source code |
| nlmixrLogo | Man page Source code |
| nlmixrParHist_ | Man page Source code |
| nlmixrParameters | Source code |
| nlmixrPosthoc | Man page Source code |
| nlmixrPosthoc.default | Source code |
| nlmixrPred | Man page Source code |
| nlmixrPrint | Man page Source code |
| nlmixrSim | Man page Source code |
| nlmixrTest | Man page Source code |
| nlmixrUI | Man page |
| nlmixrUI.dynmodelfun | Man page |
| nlmixrUI.dynmodelfun2 | Man page |
| nlmixrUI.focei.fixed | Man page |
| nlmixrUI.focei.inits | Man page |
| nlmixrUI.nlme.specs | Man page |
| nlmixrUI.nlme.var | Man page |
| nlmixrUI.nlmefun | Man page |
| nlmixrUI.rxode.pred | Man page |
| nlmixrUI.saem.ares | Man page |
| nlmixrUI.saem.bres | Man page |
| nlmixrUI.saem.cres | Man page |
| nlmixrUI.saem.distribution | Man page |
| nlmixrUI.saem.eta.trans | Man page |
| nlmixrUI.saem.fit | Man page |
| nlmixrUI.saem.fixed | Man page |
| nlmixrUI.saem.init | Man page |
| nlmixrUI.saem.init.omega | Man page |
| nlmixrUI.saem.init.theta | Man page |
| nlmixrUI.saem.log.eta | Man page |
| nlmixrUI.saem.model | Man page |
| nlmixrUI.saem.model.omega | Man page |
| nlmixrUI.saem.res.mod | Man page |
| nlmixrUI.saem.res.name | Man page |
| nlmixrUI.saem.rx1 | Man page |
| nlmixrUI.saem.theta.name | Man page |
| nlmixrUI.theta.pars | Man page |
| nlmixrUnscaled_ | Man page Source code |
| nlmixrValidate | Man page Source code |
| nlmixrVersion | Man page Source code |
| nlmixr_fit | Man page Source code |
| nlmixr_fit0 | Source code |
| nlmixrfindLhs | Man page Source code |
| nlmixrfindRhs | Source code |
| nlmixrfindRhsLhs | Source code |
| nmDataConvert | Man page Source code |
| nmDocx | Man page Source code |
| nmLst | Man page Source code |
| nmSave | Man page Source code |
| nmTest | Man page |
| nmsimplex | Man page Source code |
| nobs.nlmixrFitCore | Source code |
| nsis | Source code |
| ofv | Man page Source code |
| ofv.nlmixrFitData | Source code |
| par.1cmt.CL | Source code |
| par.1cmt.CL.oral | Source code |
| par.1cmt.CL.oral.tlag | Source code |
| par.1cmt.micro | Source code |
| par.1cmt.micro.oral | Source code |
| par.1cmt.micro.oral.tlag | Source code |
| par.2cmt.CL | Source code |
| par.2cmt.CL.oral | Source code |
| par.2cmt.CL.oral.tlag | Source code |
| par.2cmt.micro | Source code |
| par.2cmt.micro.oral | Source code |
| par.2cmt.micro.oral.tlag | Source code |
| par.3cmt.CL | Source code |
| par.3cmt.CL.oral | Source code |
| par.3cmt.CL.oral.tlag | Source code |
| par.3cmt.micro | Source code |
| par.3cmt.micro.oral | Source code |
| par.3cmt.micro.oral.tlag | Source code |
| parseOM | Source code |
| pdBlocked | Man page |
| pdCompSymm | Man page |
| pdConstruct | Man page |
| pdDiag | Man page |
| pdFactor | Man page |
| pdIdent | Man page |
| pdLogChol | Man page |
| pdMat | Man page |
| pdMatrix | Man page |
| pdNatural | Man page |
| pdSymm | Man page |
| performNorm | Man page |
| pheno_sd | Man page |
| plot.dyn.ID | Man page |
| plot.dyn.mcmc | Man page Source code |
| plot.nlmixrAugPred | Source code |
| plot.nlmixrFitCore | Source code |
| plot.nlmixrFitData | Man page Source code |
| plot.nlmixrPlotList | Source code |
| plot.nlmixrSim | Source code |
| plot.saemFit | Man page Source code |
| preCondInv | Man page Source code |
| preconditionFit | Man page Source code |
| predict.nlmixrFitData | Man page Source code |
| predict.nlmixr_nlme | Source code |
| prediction | Man page Source code |
| print.dyn.ID | Man page Source code |
| print.dyn.mcmc | Man page Source code |
| print.gnlmm.fit | Man page Source code |
| print.nlmixrBoostrapSummary | Source code |
| print.nlmixrClass | Source code |
| print.nlmixrFitCore | Source code |
| print.nlmixrFitCoreSilent | Source code |
| print.nlmixrGill83 | Source code |
| print.nlmixrLstSilent | Source code |
| print.nlmixrPlotList | Source code |
| print.nlmixrUI | Man page |
| print.nlmixrVpc | Source code |
| print.saemFit | Man page |
| probit | Man page |
| probitInv | Man page |
| pump | Man page |
| random.effects | Man page |
| ranef | Man page |
| ranef.nlmixrFitCore | Source code |
| rats | Man page |
| reStruct | Man page |
| reexports | Man page |
| refresh | Source code |
| removeCovMultiple | Man page |
| removeCovVar | Man page |
| removeCovariate | Man page Source code |
| residuals.nlmixrFitData | Man page Source code |
| rmvnorm | Source code |
| rxCat | Man page |
| rxClean | Man page |
| rxParam | Man page |
| rxParams | Man page |
| rxParams.nlmixrFitData | Source code |
| rxSolve | Man page |
| rxSolve.nlmixrFitData | Man page Source code |
| rxSymPySetupPred | Man page |
| saem | Man page |
| saem.fit | Man page |
| saem.fit.RxODE | Man page |
| saem.fit.default | Man page |
| saem.fit.function | Man page |
| saem.fit.nlmixr.ui.nlme | Man page |
| saem.fit.nlmixrUI | Man page |
| saemControl | Man page Source code |
| saem_do_pred | Source code |
| saem_fit | Source code |
| sampling | Source code |
| setCov | Man page Source code |
| setOfv | Man page Source code |
| sim.one | Source code Source code |
| simulate.nlmixrFitData | Man page Source code |
| solve.nlmixrFitData | Man page Source code |
| sourceCppFunction | Source code |
| sqrtm | Man page Source code |
| stat_amt | Man page |
| stat_cens | Man page |
| str.nlmixrFitData | Source code |
| summary.dyn.ID | Man page Source code |
| summary.dyn.mcmc | Man page Source code |
| summary.saemFit | Man page |
| tableControl | Man page Source code |
| theo_md | Man page |
| theo_sd | Man page |
| thresh | Source code |
| tidy.nlmixrFitCore | Source code |
| traceplot | Man page Source code |
| traceplot.nlmixrFitCore | Man page Source code |
| uni_slice | Source code |
| use.utf | Source code |
| varComb | Man page |
| varConstPower | Man page |
| varExp | Man page |
| varFixed | Man page |
| varFunc | Man page |
| varIdent | Man page |
| varPower | Man page |
| varWeights | Man page |
| vcov.nlmixrFitCore | Source code |
| vpc | Man page Source code |
| vpc.default | Man page Source code |
| vpc.nlme | Source code |
| vpc.nlmixrFitData | Man page Source code |
| vpc.nlmixrNlme | Man page Source code |
| vpc.nlmixrVpc | Man page Source code |
| vpc.saemFit | Man page Source code |
| vpc.ui | Man page Source code |
| vpcNlmixrNlme | Man page |
| vpc_nlmixr_nlme | Man page Source code |
| vpc_saemFit | Man page Source code |
| vpc_ui | Man page Source code |
| warfarin | Man page |
| yeoJohnson | Man page Source code |
