add.simmap.legend: Add legend to stochastically mapped tree

In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)

Add legend to stochastically mapped tree

Description

Adds a legend (by default, interactively) to a plotted stochastic character mapped tree.

Usage

add.simmap.legend(leg=NULL, colors, prompt=TRUE, vertical=TRUE, ...)

Arguments

leg	states for the discrete character in the order of colors.
colors	colors for the legend in the order of leg, or, if leg=NULL, named vector of colors in which names(colors are the states of the mapped discrete character.
prompt	logical value indicating whether the location of the legend should be obtained interactively (i.e., by clicking in the plotting area).
vertical	logical value indicating whether to plot the legend vertically (if TRUE) or horizontally.
...	optional arguments including: x x-coordinate of the legend (if prompt=FALSE); y y-coordinate of the legend; and shape which can be shape="square", the default, or shape="circle".

Details

Redundant with legend, which is much more powerful but somewhat more complicated to use.

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

plotSimmap

phytools documentation built on June 22, 2024, 10:39 a.m.