as.Qmatrix: Convert a fitted M_k_ model to a Q-matrix

View source: R/fitMk.R

as.QmatrixR Documentation

Convert a fitted Mk model to a Q-matrix

Description

This function extracts a Q-matrix (in the form of an object of class "Qmatrix" from a fitted Mk model.

Usage

as.Qmatrix(x, ...)
## S3 method for class 'fitMk'
as.Qmatrix(x, ...)
## S3 method for class 'Qmatrix'
plot(x, ...)
## S3 method for class 'Qmatrix'
print(x, ...)

Arguments

x

fitted Mk model. (For instance, an object of class "fitMk".) In the case of print.Qmatrix, an object of class "Qmatrix".

...

optional arguments.

Value

An object of class "Qmatrix".

plot.Qmatrix invisibly returns the coordinates of vertices of the plotted Q-matrix.

Author(s)

Liam Revell liam.revell@umb.edu, Joan Maspons

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

See Also

fitMk


phytools documentation built on Sept. 2, 2022, 1:06 a.m.