ave.rates: Average the posterior rates

In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)

Average the posterior rates

Description

Internal function for posterior.evolrate.

Usage

ave.rates(tree, shift, tips, sig1, sig2, ave.shift, showTree=TRUE)

Arguments

tree	a tree.
shift	the shift point for this sample.
tips	tip names tipward of shift.
sig1	\sigma_1^2.
sig2	\sigma_2^2.
ave.shift	average shift from all samples.
showTree	logical value indicating whether to plot the rate-stretched tree.

Value

A list of the rates.

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

evol.rate.mcmc, minSplit, posterior.evolrate

phytools documentation built on Nov. 5, 2025, 5:11 p.m.