ave.rates: Average the posterior rates

View source: R/evol.rate.mcmc.R

ave.ratesR Documentation

Average the posterior rates

Description

Primarily used internally by posterior.evolrate.

Usage

ave.rates(tree, shift, tips, sig1, sig2, ave.shift, showTree=TRUE)

Arguments

tree

a tree.

shift

the shift point for this sample.

tips

tip names tipward of shift.

sig1

σ_1^2.

sig2

σ_2^2.

ave.shift

average shift from all samples.

showTree

logical value indicating whether to plot the rate-stretched tree.

Value

A list of the rates.

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

See Also

evol.rate.mcmc, minSplit, posterior.evolrate


phytools documentation built on Sept. 2, 2022, 1:06 a.m.