drop.tip.contMap: Drop tip or tips from an object of class '"contMap"' or...

In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)

Drop tip or tips from an object of class "contMap" or "densityMap"

Description

Drops one or multiple tips from an object of class "contMap" or "densityMap".

Usage

## S3 method for class 'contMap'
drop.tip(phy, tip, ...)
## S3 method for class 'densityMap'
drop.tip(phy, tip, ...)
## S3 method for class 'contMap'
keep.tip(phy, tip, ...)
## S3 method for class 'densityMap'
keep.tip(phy, tip, ...)

Arguments

phy	an object of class "contMap" or "densityMap".
tip	name or names of species to be dropped or kept.
...	optional arguments to be passed to drop.tip.simmap.

Details

These functions are equivalent to drop.tip and keep.tip in the ape package, but for objects of class "contMap" and "densityMap".

For more information about objects of class "contMap" or "densityMap", please refer to the documentation pages for contMap or densityMap, respectively.

Value

An object of class "contMap" or "densityMap".

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

contMap, densityMap, drop.tip, drop.tip.simmap, keep.tip

phytools documentation built on April 3, 2025, 10:43 p.m.