averageTree | R Documentation |

These functions compute average trees or consensus trees by various criteria.

averageTree(trees, start=NULL, method="quadratic.path.difference", tol=1e-12, quiet=FALSE, ...) ls.consensus(trees, start=NULL, tol=1e-12, quiet=FALSE, ...) minTreeDist(tree, trees, method="quadratic.path.difference", ...)

`trees` |
object of class |

`tree` |
object of class |

`start` |
starting tree for optimization. |

`method` |
distance criterion for minimization. Options are |

`tol` |
tolerance value for optimization. |

`quiet` |
logical value indicating whether to run "quietly" or not. |

`...` |
other arguments to be passed internally. |

An object of class `"phylo"`

with edge lengths.

Liam Revell liam.revell@umb.edu

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