bd: Convert object of class "birthdeath" to raw birth & death...

View source: R/utilities.R

bdR Documentation

Convert object of class "birthdeath" to raw birth & death rates

Description

This function converts an object of class "birthdeath" to a vector with the ML birth & death rates.

Note that this is somewhat unnecessary as phytools now contains functions to fit birth-death and pure-birth diversification models from trees (fit.bd and fit.yule) that also take into account incomplete sampling fraction.

Usage

bd(x)

Arguments

x

object of class "birthdeath".

Value

A vector.

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

See Also

birthdeath, fit.bd, fit.yule


phytools documentation built on Sept. 2, 2022, 1:06 a.m.