View source: R/branching.diffusion.R
branching.diffusion | R Documentation |
This function creates an animation of branching random diffusion (i.e., Brownian motion evolution with speciation).
branching.diffusion(sig2=1, b=0.0023, time.stop=1000, ylim=NULL,
smooth=TRUE, pause=0.02, record=NULL, path=NULL, ...)
sig2 |
variance of BM process, |
b |
birthrate for branching process. |
time.stop |
number of generations to run. |
ylim |
y limits (for plotting). |
smooth |
no longer used. |
pause |
pause (in s) between generations. |
record |
filename for video file output (no video if |
path |
full path to file for video rendering. (By default |
... |
optional arguments. |
For animation to be recorded to file, the function requires the package animation as well as a video renderer.
An animated plot and (optionally) a recorded video file.
Liam Revell liam.revell@umb.edu
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
bmPlot
, fastBM
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