renum | R Documentation |
Renumerates residue position.
renum(up_id, pos, from, to, ...)
up_id |
the UniProt ID. |
pos |
position in the initial sequence. |
from |
origin of the initial sequence, it should be one among 'uniprot', 'metosite' and 'pdb'. |
to |
target sequence, it should be one among 'uniprot', 'metosite' and 'pdb'. |
... |
additional arguments (PDB ID and chain) when 'pdb' is either origin or destination. |
Either the origin sequence or the target sequence should be uniprot. Nevertheless, the conversion pdb -> metosite, for instance, can be achieved through the path: pdb -> uniprot -> metosite. If 'pdb' is selected, then the PDB ID and the involved chain must be provided, in that order.
Returns the final position.
Juan Carlos Aledo
is.at(), aa.at(), renum.pdb(), renum.meto(), aa.comp()
## Not run: renum(up_id = 'P01009', pos = 60, from = 'uniprot', to = 'pdb', pdb = '1ATU', chain = 'A') ## End(Not run)
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