pureseqtmr: Predict Transmembrane Protein Topology

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.

Getting started

Package details

AuthorRichèl J.C. Bilderbeek [aut, cre] (<https://orcid.org/0000-0003-1107-7049>)
MaintainerRichèl J.C. Bilderbeek <richel@richelbilderbeek.nl>
URL https://github.com/richelbilderbeek/pureseqtmr/
Package repositoryView on CRAN
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pureseqtmr documentation built on April 6, 2023, 5:20 p.m.