Files in pureseqtmr
Predict Transmembrane Protein Topology
MD5
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/is_topology_line.R
R/is_valid_protein_sequence.R
R/get_pureseqtm_version.R
R/is_on_ci.R
R/are_valid_protein_sequences.R
R/check_topology_str.R
R/check_protein_sequence.R
R/check_topology.R
R/predict_topologies_from_sequences.R
R/is_tmh.R
R/plot_topology.R
R/save_tibble_as_fasta_file.R
R/predict_topology.R
R/predict_topology_from_sequence.R
R/pureseqtmr.R
R/check_pureseqtm_installation.R
R/install_pureseqtm.R
R/count_n_tmhs.R
R/get_default_pureseqtm_folder.R
R/check_protein_sequences.R
R/create_pureseqtm_files.R
R/calc_distance_to_tmh_center_from_topology_str.R
R/default_params_doc.R
R/convert_tmhmm_to_pureseqtm_topology.R
R/create_pureseqtm_proteome_file.R
R/run_pureseqtm_proteome.R
R/calc_distance_to_tmh_center_from_topology.R
R/is_pureseqtm_installed.R
R/pureseqtmr_report.R
R/load_topology_file_as_tibble.R
R/mock_predict_topologies_from_sequences.R
R/tally_tmhs.R
R/use_rcpp.R
R/load_fasta_file_as_tibble_r.R
R/are_tmhs.R
R/get_pureseqtm_url.R
R/load_fasta_file_as_tibble.R
R/parse_pureseqtm_proteome_text.R
R/get_example_filename.R
R/mock_predict_topology.R
R/uninstall_pureseqtm.R
R/is_protein_name_line.R
R/get_example_filenames.R
R/load_fasta_file_as_tibble_cpp.R
src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp
src/load_fasta_file_as_tibble_cpp_stl.cpp
src/RcppExports.cpp
src/load_fasta_file_as_tibble_cpp_raw.cpp
src/load_fasta_file_as_tibble_cpp_raw.h
src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.h
src/load_fasta_file_as_tibble_cpp_stl.h
inst/doc/demo.Rmd
inst/doc/demo.R
inst/doc/demo.html
inst/extdata/5728.topo
inst/extdata/5728.fasta
inst/extdata/UP000005640_9606_no_u.tmhmm
inst/extdata/human_selenoproteins.fasta
inst/extdata/100507436.topo
inst/extdata/UP000464024.fasta
inst/extdata/short.fasta
inst/extdata/garbage.fasta
build/vignette.rds
vignettes/demo.Rmd
man/get_pureseqtm_version.Rd
man/is_topology_line.Rd
man/predict_topology.Rd
man/is_pureseqtm_installed.Rd
man/tally_tmhs.Rd
man/check_protein_sequence.Rd
man/mock_predict_topology.Rd
man/load_fasta_file_as_tibble_cpp_raw.Rd
man/save_tibble_as_fasta_file.Rd
man/check_protein_sequences.Rd
man/mock_predict_topologies_from_sequences.Rd
man/install_pureseqtm.Rd
man/create_pureseqtm_files.Rd
man/plot_topology.Rd
man/calc_distance_to_tmh_center_from_topology_str_cpp_stl.Rd
man/predict_topology_from_sequence.Rd
man/calc_distance_to_tmh_center_from_topology_str.Rd
man/is_tmh.Rd
man/are_tmhs.Rd
man/count_n_tmhs.Rd
man/uninstall_pureseqtm.Rd
man/check_topology.Rd
man/check_topology_str.Rd
man/is_on_github_actions.Rd
man/is_on_ci.Rd
man/load_fasta_file_as_tibble_r.Rd
man/get_example_filename.Rd
man/load_fasta_file_as_tibble.Rd
man/calc_distance_to_tmh_center_from_topology.Rd
man/pureseqtmr.Rd
man/default_params_doc.Rd
man/predict_topologies_from_sequences.Rd
man/is_on_appveyor.Rd
man/is_valid_protein_sequence.Rd
man/run_pureseqtm_proteome.Rd
man/is_protein_name_line.Rd
man/load_fasta_file_as_tibble_cpp.Rd
man/is_on_travis.Rd
man/load_topology_file_as_tibble.Rd
man/get_pureseqtm_url.Rd
man/are_valid_protein_sequences.Rd
man/get_example_filenames.Rd
man/convert_tmhmm_to_pureseqtm_topology.Rd
man/parse_pureseqtm_proteome_text.Rd
man/get_default_pureseqtm_folder.Rd
man/create_pureseqtm_proteome_file.Rd
man/pureseqtmr_report.Rd
man/check_pureseqtm_installation.Rd
man/figures/GitHubActions.png
man/figures/AppVeyor.png
man/figures/TravisCI.png
man/figures/sars_cov_2_topology.png
man/figures/Codecov.png
