Man pages for pureseqtmr
Predict Transmembrane Protein Topology

are_tmhsAre the sequences transmembrance helices?
check_pureseqtm_installationChecks the installation of PureseqTM. Throws a helpful error...
check_topologyCheck if the topology is valid.
create_pureseqtm_filesCreate the five PureseqTM output files, by running PureseqTM.
create_pureseqtm_proteome_fileCreate the output file of a PureseqTM proteome run
default_params_docThis function does nothing. It is intended to inherit is...
get_default_pureseqtm_folderGet the path to the folder where this package installs...
get_example_filenameGet the full path to a PureseqTM example file.
get_example_filenamesGet the full path to all PureseqTM example files
get_pureseqtm_urlGet the URL of the PureseqTM source code
get_pureseqtm_versionGet the PureseqTM version
install_pureseqtmInstall PureseqTM to a local folder
is_on_appveyorDetermines if the environment is AppVeyor
is_on_ciDetermines if the environment is a continuous integration...
is_on_travisDetermines if the environment is Travis CI
is_protein_name_lineIs the line of text the name of a protein, as used within a...
is_pureseqtm_installedMeasure if PureseqTM is installed locally
is_tmhDetermine if the protein sequence contains at least one...
is_topology_lineIs the line of text the topology, as used within a FASTA...
plot_topologyPlot the topology
predict_topologyPredict the topology of a proteome
predict_topology_from_sequenceRun PureseqTM directy on a protein sequence
pureseqtmrpureseqtmr: estimate the topoplogy of membrane proteins
pureseqtmr_reportCreate a pureseqtmr report, to be used when reporting bugs
run_pureseqtm_proteomeRun PureseqTM on a proteome
tally_tmhsCount the number of transmembrane helices in a topology
uninstall_pureseqtmUninstall PureseqTM
pureseqtmr documentation built on July 30, 2020, 5:13 p.m.