create_pureseqtm_proteome_file: Create the output file of a PureseqTM proteome run

In pureseqtmr: Predict Transmembrane Protein Topology

Create the output file of a PureseqTM proteome run

Description

Create the output file of a PureseqTM proteome run

Usage

create_pureseqtm_proteome_file(
  fasta_filename,
  topology_filename = tempfile(fileext = ".top"),
  folder_name = get_default_pureseqtm_folder()
)

Arguments

fasta_filename	path to a FASTA file
topology_filename	name of the file to save a protein's topology to
folder_name	superfolder of PureseqTM. The superfolder's name is /home/[user_name]/.local/share by default, as can be obtained by get_default_pureseqtm_folder

Value

the filename

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_pureseqtm_installed()) {
  fasta_filename <- get_example_filename("1bhaA.fasta")
  create_pureseqtm_proteome_file(fasta_filename)
}

pureseqtmr documentation built on April 6, 2023, 5:20 p.m.