create_pureseqtm_proteome_file: Create the output file of a PureseqTM proteome run

Description Usage Arguments Value Author(s) Examples

View source: R/create_pureseqtm_proteome_file.R

Description

Create the output file of a PureseqTM proteome run

Usage

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create_pureseqtm_proteome_file(
  fasta_filename,
  topology_filename = tempfile(fileext = ".top"),
  folder_name = get_default_pureseqtm_folder()
)

Arguments

fasta_filename

path to a FASTA file

topology_filename

name of the file to save a protein's topology to

folder_name

superfolder of PureseqTM. The superfolder's name is /home/[user_name]/.local/share by default, as can be obtained by get_default_pureseqtm_folder

Value

the filename

Author(s)

Richèl J.C. Bilderbeek

Examples

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library(testthat)

if (is_pureseqtm_installed()) {
  fasta_filename <- get_example_filename("1bhaA.fasta")
  create_pureseqtm_proteome_file(fasta_filename)
}

pureseqtmr documentation built on July 30, 2020, 5:13 p.m.